EY720463

Overview
NameEY720463
Unique NameEY720463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_KLEP7 (Multidrug resistance protein mdtC OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.146e-13
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL +A   +     QL  P+S    +   ++ F    NA ++  L A+  +Y+VL   YES   PL IL T+P +  GAL+ L +  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GRSLSEASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIATVYIVLGVLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTPEEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SHISS (Multidrug resistance protein mdtC OS=Shigella sonnei (strain Ss046) GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SHIFL (Multidrug resistance protein mdtC OS=Shigella flexneri GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  807 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 939
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SHIF8 (Multidrug resistance protein mdtC OS=Shigella flexneri serotype 5b (strain 8401) GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  807 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 939
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SHIBS (Multidrug resistance protein mdtC OS=Shigella boydii serotype 4 (strain Sb227) GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_SHIB3 (Multidrug resistance protein mdtC OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=mdtC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_ESCF3 (Multidrug resistance protein mdtC OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=mdtC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_ECOUT (Multidrug resistance protein mdtC OS=Escherichia coli (strain UTI89 / UPEC) GN=mdtC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALQLFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_ECOSM (Multidrug resistance protein mdtC OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdtC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
[Close]
BLAST of EY720463 vs. ExPASy Swiss-Prot
Match: MDTC_ECOSE (Multidrug resistance protein mdtC OS=Escherichia coli (strain SE11) GN=mdtC PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 2 
Query:   92 GVSLGQAVAFLQAHSQQL--PASFSHDWQADSRQFIHEGNALMLTFLFALIVIYMVLAAQYESLTDPLIILITVPLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELQLLYRCTPAQAI 484
            G SL  A A +     QL  P++    +   ++ F    N+ ++  + A+  +Y+VL   YES   PL IL T+P +  GAL+ L L  A  ++   IG++ LIG++ K+ I+MV+FA E Q     TP +AI
Sbjct:  811 GKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRHGNLTPQEAI 943
The following BLAST results are available for this feature:
BLAST of EY720463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
MDTC_KLEP74.146e-1335.34Multidrug resistance protein mdtC OS=Klebsiella pn... [more]
MDTC_SHISS7.072e-1334.59Multidrug resistance protein mdtC OS=Shigella sonn... [more]
MDTC_SHIFL7.072e-1334.59Multidrug resistance protein mdtC OS=Shigella flex... [more]
MDTC_SHIF87.072e-1334.59Multidrug resistance protein mdtC OS=Shigella flex... [more]
MDTC_SHIBS7.072e-1334.59Multidrug resistance protein mdtC OS=Shigella boyd... [more]
MDTC_SHIB37.072e-1334.59Multidrug resistance protein mdtC OS=Shigella boyd... [more]
MDTC_ESCF37.072e-1334.59Multidrug resistance protein mdtC OS=Escherichia f... [more]
MDTC_ECOUT7.072e-1334.59Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECOSM7.072e-1334.59Multidrug resistance protein mdtC OS=Escherichia c... [more]
MDTC_ECOSE7.072e-1334.59Multidrug resistance protein mdtC OS=Escherichia c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-009-G09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720463 ID=EY720463; Name=EY720463; organism=Citrus sinensis; type=EST; length=489bp
CGTGGTGAGCCTGCACAGCGTGATCGAGCCGAACAAGCTCAAGCAGTTCA
ATCAGCAGAACAGCGCGACCTTCCAGGGCATCCCGGCGCCGGGGGTCAGC
CTGGGTCAGGCGGTGGCGTTTTTGCAGGCGCACAGCCAACAGCTGCCGGC
CAGCTTCAGCCATGACTGGCAGGCCGATTCGCGCCAGTTCATTCACGAAG
GCAATGCGTTGATGCTGACGTTCCTGTTTGCGCTGATCGTGATCTATATG
GTGCTGGCCGCGCAGTATGAAAGCCTGACCGATCCGCTGATCATCCTGAT
CACGGTGCCGCTGTCGATCTGCGGCGCGTTGATCCCGCTGGCCCTGGGTT
TGGCCACGATCAACATCTACACGCAGATTGGCTTGGTGACGTTGATCGGA
CTGATCAGCAAACACGGGATCCTGATGGTCGAGTTCGCCAACGAGTTACA
GCTGCTATACCGCTGCACACCGGCTCAGGCGATCATTCG
back to top