EY720308

Overview
NameEY720308
Unique NameEY720308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 82/159 (51.57%), Postives = 115/159 (72.33%), Query Frame = 2
Query:   62 KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KL+SV D+V+ HWATYGR++++RYDYE  ++  A +++ +L  L      V+K   G +     +  AD+F Y DPVDGS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   ++Q AL PL+DLAL +SK+ +FTGR  PTVIT
Sbjct:  424 KLVSVEDIVRQHWATYGRHYYTRYDYENVDAGKAKELMEHLVKLQSSIPEVNKIVKGIRSDVASVASADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDASKTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_RAT (Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 85/154 (55.19%), Postives = 112/154 (72.73%), Query Frame = 2
Query:   74 VSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            V D++K HW  +GRNFF+RYDYEE E+EGANKM+  L  L+  +S  G ++      Y ++ AD+F Y+DPVDGS++  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  409 VEDILKDHWQKFGRNFFTRYDYEEVEAEGANKMMKDLEALMLDRSFVGKQFSANDKVYTVEKADNFEYSDPVDGSISKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDAAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 79/160 (49.38%), Postives = 115/160 (71.88%), Query Frame = 2
Query:   59 EKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            +KL++V D+V+ HWATYGR++++RYDYE  ++  A +++  L  + S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  PTVIT
Sbjct:  424 DKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLIKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYEKDSSKTGRDSQEALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 79/160 (49.38%), Postives = 115/160 (71.88%), Query Frame = 2
Query:   59 EKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            +KL++V D+V+ HWATYGR++++RYDYE  ++  A +++  L  + S     +K    +      +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+D+AL +SK++++TGR  PTVIT
Sbjct:  424 DKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVSMQSSLSDVNKLVKEIRSDVSEVVAADEFEYKDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRVYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM1_RABIT (Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=PGM1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 86/155 (55.48%), Postives = 111/155 (71.61%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLV-SKSKAGDKYGN----YVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D++K HW  +GRNFF+RYDYEE E+EGA KM+  L  L+  +S  G ++      Y ++ AD+F Y DPVDGSV+  QG+R +F DGSRIIFRLSGTGSAGAT+R+YI+ +E D +K   D Q  L PLI +AL VS+L++ TGR  PTVIT
Sbjct:  408 SVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT 562          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.561e-40
Identity = 79/158 (50.00%), Postives = 113/158 (71.52%), Query Frame = 2
Query:   65 LISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            L+SV D+V+ HWA YGR++++RYDYE   ++GA  ++ +L  L      V+K   G +     +  AD+F Y DPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+++AL +SK++++T R  PTVIT
Sbjct:  426 LVSVEDIVRQHWAIYGRHYYTRYDYENVNADGAKDLMAHLVKLQSSIDEVNKLIKGIRSDVSNVVHADEFEYKDPVDGSVSKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDSSKIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGM_RHIRD (Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.239e-39
Identity = 76/150 (50.67%), Postives = 110/150 (73.33%), Query Frame = 2
Query:   71 SVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            SV D+V  HWA YGRN++SR+DYEE +S+ AN ++  LR+ ++ +  G  YGN  +  ADDFAY DPVD SV+  QG+R +F  GSRI+ RLSGTG+AGAT+R+Y+E++EPD ++H ++ QSAL  LI +A +++ ++  T   +PTVIT
Sbjct:  394 SVKDIVTKHWAEYGRNYYSRHDYEEVDSDAANTLVAILREKLA-TLPGTSYGNLKVAAADDFAYHDPVDQSVSKNQGIRILFEGGSRIVLRLSGTGTAGATLRLYVERYEPDAARHGIETQSALADLISVADTIAGIKAHTADSEPTVIT 542          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 78/159 (49.06%), Postives = 113/159 (71.07%), Query Frame = 2
Query:   62 KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KL++V D+V  HWATYGR++++RYDYE  ++  A +++  L  L      V++  +G +     +  AD+F Y DPVDGS++  QG+R++F DGSR++FRLSGTGS GAT+R+YIEQ+E D SK   D+Q AL PL+ +AL + K+++FTGR  PTVIT
Sbjct:  424 KLVTVEDIVHNHWATYGRHYYTRYDYENVDAGAAKELMACLVKLQSSLTEVNEIVSGIQSDVSKVVHADEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLXKMQEFTGRSAPTVIT 582          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.605e-39
Identity = 79/159 (49.69%), Postives = 111/159 (69.81%), Query Frame = 2
Query:   62 KLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDL------VSKSKAGDKYGNYVLQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            KL+SV D+V+ HWATYGR++++RYDYE  ++  A +++ +L  L      V++   G       +   D+F Y DPVDGS++S QG+R++F DGSR+IFRLSGTGS GAT+R+YIEQ+E D SK    +  AL PL++ AL +SK+ +FTGR  PTVIT
Sbjct:  424 KLVSVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMAHLVKLQSSLPEVNEIIKGASSDVSKVVHGDEFEYNDPVDGSISSHQGIRYLFEDGSRLIFRLSGTGSEGATIRLYIEQYEKDPSKIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582          
BLAST of EY720308 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.708e-39
Identity = 77/160 (48.12%), Postives = 112/160 (70.00%), Query Frame = 2
Query:   59 EKLISVSDVVKAHWATYGRNFFSRYDYEECESEGANKMIGYLRDLVSKSKAGDKYGNYV------LQFADDFAYTDPVDGSVASKQGVRFVFTDGSRIIFRLSGTGSAGATVRIYIEQFEPDVSKHEMDAQSALKPLIDLALSVSKLRDFTGREKPTVIT 520
            +KL++V ++V  HW  YGR++++RYDYE  ++E A +++  L  + S     +K    +      +  AD+F YTDPVDGSV+  QG+R++F DGSR++FRLSGTGS GAT+RIYIEQ+E D SK   ++  AL PL+D+AL +SK+++ TGR  PTVIT
Sbjct:  422 DKLVTVENIVLQHWGIYGRHYYTRYDYENVDAEAAKELMANLVKMQSSLSDVNKLIKEIQPNVADVVSADEFEYTDPVDGSVSKHQGIRYLFGDGSRLVFRLSGTGSVGATIRIYIEQYEKDSSKTGRESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581          
The following BLAST results are available for this feature:
BLAST of EY720308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PGMC1_ARATH5.942e-4251.57Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGM1_RAT5.942e-4255.19Phosphoglucomutase-1 OS=Rattus norvegicus GN=Pgm1 ... [more]
PGMC2_MAIZE5.030e-4149.38Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC1_MAIZE5.030e-4149.38Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGM1_RABIT5.030e-4155.48Phosphoglucomutase-1 OS=Oryctolagus cuniculus GN=P... [more]
PGMC_SOLTU5.561e-4050.00Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGM_RHIRD1.239e-3950.67Phosphoglucomutase OS=Rhizobium radiobacter GN=pgm... [more]
PGMC_POPTN3.605e-3949.06Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGMC_PEA3.605e-3949.69Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGMC_BROIN4.708e-3948.13Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-F11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720308 ID=EY720308; Name=EY720308; organism=Citrus sinensis; type=EST; length=739bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGA
AACCCAGGGAAAAGTTGATATCTGTCTCTGATGTTGTAAAAGCACATTGG
GCAACATATGGCAGAAACTTCTTTTCGAGATACGACTATGAAGAATGTGA
ATCTGAAGGAGCAAATAAAATGATAGGATATCTTAGAGATTTGGTATCTA
AGAGCAAAGCAGGCGATAAGTATGGAAATTATGTTCTTCAATTTGCAGAT
GACTTTGCATACACTGATCCAGTTGACGGAAGTGTGGCATCAAAGCAAGG
TGTTCGGTTTGTTTTCACAGACGGATCAAGGATAATATTTCGTTTATCAG
GAACTGGTTCAGCAGGTGCAACTGTTCGAATTTACATTGAACAGTTTGAG
CCAGATGTCTCTAAACATGAAATGGATGCACAATCAGCCTTGAAACCGTT
AATAGATCTGGCATTATCTGTTTCAAAGTTGAGGGACTTCACTGGAAGGG
AGAAACCTACAGTTATCACATAAAGAGCTCTCCCGTTATTAGTCTCTATG
TATCAGGTGTTATTTTAAGTTGGAGCTGAGAGATGGGCATACCAACTTTT
CATGCTGGAGTTGAGTTATCATAAATATCTCCTGTCCAGGTTTGGTTAGG
AAATCTGGGATCATGGGACCATCAATAAGTCCATGGAATGCCAATCAAGT
CCATCGGTCGAAATCAGAAAAAAAAAAAAAAAAAAAAAA
back to top