EY720285

Overview
NameEY720285
Unique NameEY720285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.246e-23
Identity = 55/161 (34.16%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+  AL  E+  D  V + GE+VG   G ++ ++GL +++G +RV DTP+ E+G  G+ +G    G +PV+E   F F  + +D +    A+  Y S G+   P+  R P G        H+       A  PG+KV+ P    DA+GLL +AIR
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIR 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++I+
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQ 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.775e-23
Identity = 54/161 (33.54%), Postives = 87/161 (54.04%), Query Frame = 2
Query:  221 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQIAVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIR 703
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++I+
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQ 163          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.007e-22
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  218 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-AVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            ++M + +A+ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S        +  R P G        HSQ   A++A  PG+KV+ P     A+GLL + I     C F
Sbjct:   69 QKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIF 237          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  218 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-AVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S        +  R P G        HSQ   A++A  PG+KV+ P     A+GLL + I     C F
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIF 235          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 57/170 (33.53%), Postives = 87/170 (51.18%), Query Frame = 2
Query:  218 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-AVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S        +  R P G        HSQ   A++A  PG+KV+ P     A+GLL + I     C F
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIF 235          
BLAST of EY720285 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.835e-22
Identity = 60/177 (33.90%), Postives = 88/177 (49.72%), Query Frame = 2
Query:  197 RNYSSAVKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSSGQI-AVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYRSEDARGLLKAAIRGPGSCCF 724
            R Y    K M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S        +  R P G        HSQ   A++A  PG+KV+ P     A+GLL + I     C F
Sbjct:   63 REYGQTQK-MNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIF 237          
The following BLAST results are available for this feature:
BLAST of EY720285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_BACSU1.246e-2334.16Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES2.775e-2333.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ2.775e-2333.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BOVIN4.007e-2234.122-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT6.835e-2233.532-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE6.835e-2233.532-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN6.835e-2233.902-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-004-D09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720285 ID=EY720285; Name=EY720285; organism=Citrus sinensis; type=EST; length=871bp
CACCACGCGTCCGTAGAATTTCGTGCTCTTCGTGTGGGCTGTGCGTTGCA
ACTTTCAACCTATTTCCCTCTCCACGGCGATCGGATCGCTGATAACTTTC
ACTTCTGAGTTGAAGATGTGGGGAATTATTAGGCAGAAAGTGGCTGCTGG
AGGAGGTTCTCCTGTTGCGAGAATTCGCCCTGTGGTATCCAATTTGAGAA
ACTACTCATCTGCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCT
GCTCTTGATGAGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGA
AGAGGTTGGGGAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGG
AGAAATATGGCCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGT
TTTACTGGGATTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGT
GGAATTCATGACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTA
ATTCTGCTGCAAAATCAAATTACATGTCTTCTGGCCAAATAGCGGTTCCT
ATCGTCTTCAGAGGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACA
CTCTCAATGTTATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTAC
TGAGCCCATACCGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATA
AGGGGTCCCGGATCCTGTTGTTTTTCTTGAAAATGAGTCGTAATATGGTG
AGTCATCCCCGGTATCACCTGAAAGTCTTGATTCCACTTGTGGCTTCCCG
TTGGGAAGCTAACATGGGAGAGAAGGAAGATGTACTATCACGCTTCCCCC
AAATGGGGGCTTCATCCACGC
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