EY720219

Overview
NameEY720219
Unique NameEY720219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.100e-45
Identity = 93/198 (46.97%), Postives = 131/198 (66.16%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPYAVPKCDE 616
            +YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T  ++  K+ L  + IDF GHALAL+  D  L++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGE P   ARL A YGG+YM NK    +  +    + V +  G+  R ++    P Y   + ++
Sbjct:   98 RYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKS-EGEIARCKQLICDPSYVKDRVEK 293          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 2.100e-45
Identity = 93/198 (46.97%), Postives = 131/198 (66.16%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPYAVPKCDE 616
            +YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T  ++  K+ L  + IDF GHALAL+  D  L++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGE P   ARL A YGG+YM NK    +  +    + V +  G+  R ++    P Y   + ++
Sbjct:   98 RYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKS-EGEIARCKQLICDPSYVKDRVEK 293          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.582e-45
Identity = 93/198 (46.97%), Postives = 130/198 (65.66%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPYAVPKCDE 616
            +YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  +    E+  K+ L  + IDF GHALAL+  D  L++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGE P   ARL A YGG+YM NK    +  +    + V +  G+  R ++    P Y   + ++
Sbjct:   98 RYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVIGVKS-EGEVARCKQLICDPSYVKDRVEK 293          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 7.979e-45
Identity = 91/198 (45.96%), Postives = 132/198 (66.67%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPYAVPKCDE 616
            +Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + +  ++  K+ L  + IDF GH+LAL+  D  L++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGE P   ARL A YGG+YM NK    +  +    V V +  G+  R ++    P Y   + ++
Sbjct:   98 RYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKS-EGEIARCKQLICDPSYVKDRVEK 293          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.979e-45
Identity = 91/198 (45.96%), Postives = 132/198 (66.67%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPYAVPKCDE 616
            +Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + +  ++  K+ L  + IDF GH+LAL+  D  L++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGE P   ARL A YGG+YM NK    +  +    V V +  G+  R ++    P Y   + ++
Sbjct:   98 RYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIVQNGKVVGVKS-EGEIARCKQLICDPSYVKDRVEK 293          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.322e-42
Identity = 84/157 (53.50%), Postives = 114/157 (72.61%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NK 493
            +Y+ FK + GS+VY  G++ KVP  +MEALKSPLM +FEKRRA+KF  +V +Y E+DP T++ +++ + +   +  K+GL   T DFIGHA+AL+ DD  L +PA +T +R+ LYA SIA+F G SPYIYPLYGLGE P   ARL A YGG+YM N+
Sbjct:   97 RYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQ 252          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.257e-42
Identity = 81/154 (52.60%), Postives = 115/154 (74.68%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM 484
            +Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+AL T+D  L +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGE P   ARL A YGG+YM
Sbjct:  106 RYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYM 258          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RAE2_MOUSE (Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSY 481
            +Y  FK V     + +GKV +VP +  +   S  + + EKR   KF  +  DY+++   + E  D  Q +  + +    L  N   FI H++A+ ++    +   LD ++  K + + + RF G +P+I+PLYG GE P    R+ A +GG Y
Sbjct:  254 RYAEFKNVTRILAFWEGKVEQVPCSRADVFNSKELSMVEKRMLMKFLTFCLDYEQH---SDEYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSES---SCTTLDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVY 399          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 1.163e-11
Identity = 41/153 (26.80%), Postives = 76/153 (49.67%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSY 481
            +Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +  ++T  E +    L  N    + H++A+ ++        +D +K  K +   + R+ G +P+++PLYG GE P    R+ A +GG Y
Sbjct:  253 RYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETAS---STIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIY 398          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RAE2_HUMAN (Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.984e-11
Identity = 42/153 (27.45%), Postives = 76/153 (49.67%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSY 481
            +Y+ FK V     + +GKV +VP +  +   S  + + EKR   KF  +  +Y+++     E     Q +  E +    L  N   F+ H++A+ ++    +   +D +   K + + + RF G +P+++PLYG GE P    R+ A +GG Y
Sbjct:  255 RYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQHPD---EYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSES---SCTTIDGLNATKNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGIY 400          
The following BLAST results are available for this feature:
BLAST of EY720219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GDIB_PONAB2.100e-4546.97Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_HUMAN2.100e-4546.97Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_CANFA3.582e-4546.97Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDIB_RAT7.979e-4545.96Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE7.979e-4545.96Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDI1_SCHPO6.322e-4253.50Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST8.257e-4252.60Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RAE2_MOUSE8.054e-1330.07Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN1.163e-1126.80Rab proteins geranylgeranyltransferase component A... [more]
RAE2_HUMAN1.984e-1127.45Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720219 ID=EY720219; Name=EY720219; organism=Citrus sinensis; type=EST; length=906bp
CACGCCGTCGTACTGATGTTACAAGTATCTGTACTTCAAAGCTGTGGATG
GCAGCTTCGTCTATAATAAAGGAAAGGTCCATAAGGTGCCAGCAACTGAT
ATGGAAGCGCTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGC
ACGCAAGTTTTTCATTTATGTGCAAGATTATGATGAAAATGATCCCAAAA
CACACGAGGGAATGGACTTGACCCAGGTGACCACTATAGAGTTGATTGCG
AAGTATGGTCTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGC
ACTTCATACAGATGATCGTGACTTAAACGAACCTGCTCTTGATACAGTGA
AGAGAATGAAGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCA
CCATACATTTACCCTCTGTATGGGCTTGGAGAGCCGCCTCACGCCCTTGC
CCGGCTGAGAGCTGGTTATGGTGGGAGCTATATGTAGAATAAAACCGAGG
GCAACGTAAAGTTTGAAGAATAATGTAAAGTATCCGTGTCCAATTTTAAC
GGGAAAGAGGGACGCGCGCAAGAAGGGTCCGCGACCCCCCCATATGCTGT
CCCCAAATGTGACGAAGAGTGGGCTCGTTCCTAGAGCCATCGCTTGGCAG
ACCCCCCCAACGTCAACACTCGGTCATCCCTTATCACATCTTGTGACACC
TGCCCCGACACCGGGCGGGGCCCCACCTCCCCACCCACATCCCAAAGCCC
AAACCCACTCCACCCCATCCACAACCAGCCACCGCGATCAAGTAGCGCGC
GCCTCCTCCACACACACCCACCACCACTCCGACTCCACACCACGCATTAC
CGTCTGGGCTCTAGGAAACCAAGCACCCACCCACGCAACGACCGCGCGCA
GCGGAG
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