EY720219

Overview
NameEY720219
Unique NameEY720219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 42/155 (27.10%), Postives = 77/155 (49.68%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN--DPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSY 481
            +Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E+  + + +EG      T  E +    L  N   F+ H++A+ ++        +D +K  K + + + R+ G +P+++PLYG GE P    R+ A +GG Y
Sbjct:  250 RYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSETTSCT---VDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIY 395          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.591e-11
Identity = 47/191 (24.61%), Postives = 86/191 (45.03%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSYM*NKTEGNVKFEE*CKVSVSNFNGKEGRAQEGSATPPY 595
            +Y  F+AVD   + + G++  VP +  +   +  + I EKR   KF     DY E D    + ++    T +E +    + +     +  A+A+        E     ++R + +  S+ R+ G +P+++P+YG GE P    RL A YGG Y   +   ++  +      + +  GK  RA+   + P Y
Sbjct:  128 RYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE-DKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEEG----MQRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAGKTLRAKNVVSAPGY 312          
BLAST of EY720219 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 41/153 (26.80%), Postives = 77/153 (50.33%), Query Frame = 2
Query:   23 KYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTQVTTIELIAKYGLDDNTIDFIGHALALHTDDRDLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEPPHALARLRAGYGGSY 481
            +Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+++ P  ++  + T  T  E +    L  N   F+ H++A+ ++        +D +K  K + + + R+ G +P+++PLYG GE P    R+ A +GG Y
Sbjct:  265 RYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEDH-PDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSET---TSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIY 410          
The following BLAST results are available for this feature:
BLAST of EY720219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RAE1_RAT2.591e-1127.10Rab proteins geranylgeranyltransferase component A... [more]
RABEP_DROME2.591e-1124.61Rab proteins geranylgeranyltransferase component A... [more]
RAE1_MOUSE3.384e-1126.80Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720219 ID=EY720219; Name=EY720219; organism=Citrus sinensis; type=EST; length=906bp
CACGCCGTCGTACTGATGTTACAAGTATCTGTACTTCAAAGCTGTGGATG
GCAGCTTCGTCTATAATAAAGGAAAGGTCCATAAGGTGCCAGCAACTGAT
ATGGAAGCGCTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGC
ACGCAAGTTTTTCATTTATGTGCAAGATTATGATGAAAATGATCCCAAAA
CACACGAGGGAATGGACTTGACCCAGGTGACCACTATAGAGTTGATTGCG
AAGTATGGTCTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGC
ACTTCATACAGATGATCGTGACTTAAACGAACCTGCTCTTGATACAGTGA
AGAGAATGAAGTTATACGCAGAGTCTATTGCACGATTTCAAGGAGGATCA
CCATACATTTACCCTCTGTATGGGCTTGGAGAGCCGCCTCACGCCCTTGC
CCGGCTGAGAGCTGGTTATGGTGGGAGCTATATGTAGAATAAAACCGAGG
GCAACGTAAAGTTTGAAGAATAATGTAAAGTATCCGTGTCCAATTTTAAC
GGGAAAGAGGGACGCGCGCAAGAAGGGTCCGCGACCCCCCCATATGCTGT
CCCCAAATGTGACGAAGAGTGGGCTCGTTCCTAGAGCCATCGCTTGGCAG
ACCCCCCCAACGTCAACACTCGGTCATCCCTTATCACATCTTGTGACACC
TGCCCCGACACCGGGCGGGGCCCCACCTCCCCACCCACATCCCAAAGCCC
AAACCCACTCCACCCCATCCACAACCAGCCACCGCGATCAAGTAGCGCGC
GCCTCCTCCACACACACCCACCACCACTCCGACTCCACACCACGCATTAC
CGTCTGGGCTCTAGGAAACCAAGCACCCACCCACGCAACGACCGCGCGCA
GCGGAG
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