EY720217

Overview
NameEY720217
Unique NameEY720217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_MYCTU (Riboflavin biosynthesis protein ribD OS=Mycobacterium tuberculosis GN=ribD PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.974e-13
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = -1
Query:  101 VVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAG-FISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRA 370
            VV A+ DPN +  G G  RL  AG+ V +G+  E+  A     ++ +   GLP    K A S+DGRSA  +G SQWI+   AR D HR RA
Sbjct:  103 VVYAVADPNGIAGG-GAGRLSAAGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRA 192          

HSP 2 Score: 31.9574 bits (71), Expect = 1.974e-13
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = -3
Query:    6 VLTGIGTVLKDDPQLTVRSVE---TPRQPRR 89
            +L G GTVL DDP LT R  +    P+QP R
Sbjct:  197 ILVGTGTVLADDPALTARLADGSLAPQQPLR 227          
BLAST of EY720217 vs. ExPASy Swiss-Prot
Match: RIBD_SYNY3 (Riboflavin biosynthesis protein ribD OS=Synechocystis sp. (strain PCC 6803) GN=ribD PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = -1
Query:   98 ARVVVAIGDPNPLVNGKGLARLREAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHRWRAR 376
            A+VVV + DPNPLV GKG++RLR+AGI V  G+  E    LN  F  R+    P+   K A +LDG+ A     S W+T   AR   H+ R++
Sbjct:   95 AKVVVGMVDPNPLVAGKGISRLRQAGIEVKVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQLRSQ 187          
The following BLAST results are available for this feature:
BLAST of EY720217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RIBD_MYCTU1.974e-1342.86Riboflavin biosynthesis protein ribD OS=Mycobacter... [more]
RIBD_SYNY32.130e-1343.01Riboflavin biosynthesis protein ribD OS=Synechocys... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720217 ID=EY720217; Name=EY720217; organism=Citrus sinensis; type=EST; length=379bp
ACCGCCCGGCGCGGCTGGCGCGGCGTCTCGACGCTGCGCACGGTCAATTG
CGGATCATCCTTGAGCACGGTGCCGATGCCGGTCAGCACACGCAGCTGCG
GGCGCGCCAGCGATGGCCGTCGGCGCGCGCCTCCGGGCCGGTGATCCATT
GCGACAGGCCGTTATGCAGCGCGCTGCGGCCGTCCAGCGACGCCGCCATC
TTGAGCCAGGTCCAGGGCAGCCCGCGGCTCATGCGCGAAATGAAGCCCGC
GTTCAGGGCCAGCGCCTCTTCGCGGCAGATGCCGGTGGTGACGGCGATGC
CGGCCTCGCGCAGCCGCGCCAGGCCCTTGCCGTTGACCAGCGGATTGGGA
TCGCCGATCGCCACCACCACGCGCGCCGG
back to top