EY720121

Overview
NameEY720121
Unique NameEY720121
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720121 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.459e-19
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 3
Query:   45 CFLHHHXXXXXXXXXXXXQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPGEAGYGESANVFGKPKTRSDFLPYKGYGFRLVDSLEMEP-REI 374
            CFLH                    +  +++VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSP +A YGE+ANVFGKPK  +DF  Y G GF++    +  P RE+
Sbjct:    6 CFLHQSALASSTARSSPSSSSQRYVSISKLVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREV 114          
BLAST of EY720121 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.142e-16
Identity = 45/71 (63.38%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  165 EDDGSAVSRRLALTVLIGAAAVGSKVSPGEAGYGESANVFGKPKTRSDFLPYKGYGFRLVDSLEMEP-REI 374
            EDD S VSRRLALT+L+GAAAVGSKVSP +A YGE+ANVFGKPKT +DF    G GF++    +  P RE+
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREV 71          
BLAST of EY720121 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.263e-15
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   39 TQCFLHHHXXXXXXXXXXXXQRHVSNIKPTQIVCRAQKQAVQED----DGSAVSRRLALTVLIGAAAVGSKVSPGEAGYGESANVFGKPKTRSDFLPYKGYGFRLVDSLEMEPREISRVP 386
            T CFLHHH             R  +N    Q    A+ Q+ + D    + + +SRRLALT+LIG AA+GS+VS  +A YGESANVFGKPKT +DF    G GF+++   +  P +    P
Sbjct:    4 TACFLHHHAPSPATSNLSRT-RSATNRDEQQQEHSARLQSPEADCATENDALLSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFP 122          
BLAST of EY720121 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.824e-14
Identity = 49/118 (41.53%), Postives = 63/118 (53.39%), Query Frame = 3
Query:   39 TQCFLHHHXXXXXXXXXXXXQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPGEAGYGESANVFGKPKTRSDFLPYKGYGFRLVDSLEMEPREISRVP 386
            T CFLH               R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSP  A YGE+ANVFGK K  +DF+ Y G GF+L+   +  P +    P
Sbjct:    4 TSCFLHQSTARLAASA-----RPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFP 116          
The following BLAST results are available for this feature:
BLAST of EY720121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSBP_SINAL2.459e-1946.85Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU1.142e-1663.38Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.263e-1541.67Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT1.824e-1441.53Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-D01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720121 ID=EY720121; Name=EY720121; organism=Citrus sinensis; type=EST; length=878bp
CCACGCGTCCGGAGAGAGCGAAAAGAAAAAATGGCATCACTCAATGCTTC
TTGCACCACCATGCACGCTCTACTACACCAGCAAGAACATCATCATCTCA
GCGCCACGTGTCGAACATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGA
AGCAAGCTGTCCAAGAAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCT
CTGACGGTGCTCATTGGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGG
CGAGGCTGGCTACGGTGAATCAGCCAATGTGTTTGGTAAGCCAAAGACCA
GGAGTGACTTCTTGCCATACAAGGGATATGGATTCAGGCTGGTCGATTCC
CTCGAAATGGAGCCCCGAGAAATATCGAGAGTGCCGTGGTCAGGTTCGTA
GATACCAACGACAAGTCGAGGGCCCACGGCAAGGTGCTCGGTATAATCGC
CGAGAGGGGAGGAAGTCGATCGTGAAGGAGGAGCCCCCGAGGAGTAGCCC
GGGAGGGTGGAGTAGGGGGGGGAGAGGAGGCGAGCGCGGCAAGGGCGGTG
GGAGGGGGGGGGGACGGGGGGGGGGGGGGGCGTAGAGGTGGGGGGGGGGT
GGGGACGACCAGGAAATAATGGGGTAGGGGATAACAGGAGGGGGGGGGGG
GATGAAGGGGGGAGGAGGGGGGAGGGGGGGGGGGGGGGAGGGGGGGAGGT
GGGGCTGGGAGGGGGGAAGCGCAGAACACCAGGGGGGGGCGGGGGGGGGG
GGGGGGGCCAAGAAACGGAGAAAAGAAGAGATGAAAGTGAGAAAAATAAA
GGTAAAAGTGAAACAGAAATGGGGAAGAGAAGAGGCTAGGGAGGGGAGGG
GGGGGGAGAGGGGGGAGGAAGGGGGGGG
back to top