EY720111

Overview
NameEY720111
Unique NameEY720111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.648e-18
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDM 496
            V LDVKPWDDET M +LE+AVRS+QM+GL+WG  KL PVG+G+ K QI L + DD VS++ L EE    E   +YVQ+ D+
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEE---LEGFEDYVQSTDI 208          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_DICDI (Elongation factor 1-beta OS=Dictyostelium discoideum GN=efa1B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.068e-17
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            +LLDVKPWDDETDM +LE+ VRS++M+GL+WGA KL  VGYGIKKL I L + D  VS D L E+    +   +YVQ+ D+    +I
Sbjct:  133 ILLDVKPWDDETDMVELEKCVRSIEMDGLVWGASKLVAVGYGIKKLVINLVVEDLKVSTDELEEK---IKDFEDYVQSVDVAAFNKI 216          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.543e-16
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            ++LDVKPWDDETD+K +E  +R +  +GLLWGA K  PV +GI+KL I   + DD VS+D L EE    E   ++VQ+ D+    +I
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKVSIDWLTEE---IEKLEDFVQSVDIAAFNKI 256          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTI 409
            +LLDVKPWDDETDM +LE  VRSVQ++GL+WG+ KL PVGYGI+KLQI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.228e-15
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDM 496
            V LDVKPWDDETD+ +L   V++++MEGL WGA +  PVG+GIKKLQI L + D LVS+D L       E   ++VQ+ D+
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALVSLDDL---QAAVEEDEDHVQSTDI 207          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 8.465e-15
Identity = 39/81 (48.15%), Postives = 59/81 (72.84%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDM 496
            V LDVKPWDDET+++++   V++++MEGL WGA +  P+G+GIKKLQI   + DD VS+D L  +  +EE   ++VQ+ D+
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKVSLDDL--QQSIEE-DEDHVQSTDI 200          
BLAST of EY720111 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.011e-12
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  254 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGAXKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPXNEYVQNCDMVXGXRI 514
            +L DVKPWDD  D++ L   + +V+ +GLLWG  KL PV +G+KKLQ ++ I DD V  D L E   L     + VQ+ D+V   +I
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVLSDDLEE---LIMSFEDEVQSMDIVAWNKI 222          
The following BLAST results are available for this feature:
BLAST of EY720111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B_SCHPO1.648e-1856.79Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1B_DICDI1.068e-1754.02Elongation factor 1-beta OS=Dictyostelium discoide... [more]
EF1D_DROME1.543e-1647.13Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1D_SHEEP2.228e-1569.23Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1B_CANAL2.228e-1551.85Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST8.465e-1548.15Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR3.011e-1243.6825 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-002-B09-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720111 ID=EY720111; Name=EY720111; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGAGCATATTGATGCACTTTTAAGGATCTCTGGCGTTACTG
GTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACTCCC
CCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGATGT
GGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGGCAC
GCGCAGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAGTCA
TCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAAGAA
GCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGGGGAG
CCANCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCAAATAATG
CTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTGAGGAACA
CCTGCTGGAAGAACCANTGAATGAATATGTCCAGAACTGTGATATGGTAN
CCGGCAANCGAATATGAGNTGGGGGATCCGGGGNCAANTGGGTGCGAAAN
AGGCGTCCNGGGGTGTTGGCTTGGGTANGGGAGAGANCNAAGTGGTGTGT
GTTTTGAAATGTTTGATTTTGTTTCANGGGTGTTGTGTGTGGCCCTNATG
GATTCGTCCTTCTGTGGATGCTCTCTCTCTGGAATTTGCTTACTGTGACT
GGAGTGGATATGCCTCTCTGGCATGCGCAACCTTTAGAAGCTTCATGATT
GGCAGGTGGCTTTGCCCATTTGAAGTGTTGTGAAAAGAAAAAAAAAAGGG
GGGGCGGCTCTACAGGAGCACCCTTACGTCTGGCGGGCGGGGAACATCAT
ACCCACCTGTGGGTGCCCTAAATTCATTCCCCGGCGCGCCCTTTACA
back to top