EY720090

Overview
NameEY720090
Unique NameEY720090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MSBA_HAES1 (Lipid A export ATP-binding/permease protein msbA OS=Haemophilus somnus (strain 129Pt) GN=msbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  594 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            G ++F+NV FSY   E   L+ +SF +P GK+VA+VG SGSGKSTI  L+ R +D   G I +DG +I + TL +  +   VV Q
Sbjct:  340 GEVRFENVTFSYSGKEHPALNNISFTIPQGKTVALVGRSGSGKSTIANLVTRFYDVEQGKITLDGVNIQDYTLANLREHCAVVSQ 424          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MSBA_BURPS (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  522 MFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            +F L++E  + +      PL    G+I+F +V FSY   R   + LD VSF V  G+ VA+ G SGSGK+T++ LL R FD  SGS+R+DG  + E +L      I +V Q
Sbjct:  329 IFGLIDEPREPEG--GGKPLARASGAIEFSHVSFSYGMSRDGRQTLDDVSFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQ 437          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MSBA_BURP1 (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  522 MFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            +F L++E  + +      PL    G+I+F +V FSY   R   + LD VSF V  G+ VA+ G SGSGK+T++ LL R FD  SGS+R+DG  + E +L      I +V Q
Sbjct:  329 IFGLIDEPREPEG--GGKPLARASGAIEFSHVSFSYGMSRDGRQTLDDVSFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQ 437          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MSBA_BURMA (Lipid A export ATP-binding/permease protein msbA OS=Burkholderia mallei GN=msbA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  522 MFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            +F L++E  + +      PL    G+I+F +V FSY   R   + LD VSF V  G+ VA+ G SGSGK+T++ LL R FD  SGS+R+DG  + E +L      I +V Q
Sbjct:  329 IFGLIDEPREPEG--GGKPLARASGAIEFSHVSFSYGMSRDGRQTLDDVSFTVAPGEMVALAGPSGSGKTTLVNLLPRFFDPSSGSVRVDGVALPEYSLRDLRNQIAMVSQ 437          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: ABCBA_HUMAN (ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 48/127 (37.80%), Postives = 70/127 (55.12%), Query Frame = 3
Query:  477 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            S Y E ++ L     +++LLE +  +   +  + LN K   G+++F NVHF+Y    E  I    S  +P+G   A+VG SGSGKST+L LL R +D  SG+I +DG DI ++        IG V Q
Sbjct:  450 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 575          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.696e-13
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = 3
Query:  519 SMFQLLEEKADIQDR--DNAMPLNLKGGSIQFDNVHFSYLTERKIL--DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            S+F +L+   +I+    D  +P N+KG  I+F NV F+Y T   ++     S  +  GKS AIVG SGSGKSTI+ L+ R +D   G ++IDG+DI    L S  + IG+V Q
Sbjct:  989 SVFAVLDRYTNIEPEKPDGFVPQNIKG-QIKFVNVDFAYPTRPDVIIFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQ 1100          

HSP 2 Score: 68.5514 bits (166), Expect = 5.741e-11
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  498 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            +++V  + + ++++   DI D DN     L+   G +QF +V F Y +  E  I D +   +P+GKSVA+VG SGSGKST++ LL R +D   G I IDG  I ++ ++     +G+V Q
Sbjct:  344 EAVVAGERIIEVIKRVPDI-DSDNPRGQVLENIKGEVQFKHVKFMYSSRPETPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQMGLVSQ 462          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MSBA_METCA (Lipid A export ATP-binding/permease protein msbA OS=Methylococcus capsulatus GN=msbA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 44/99 (44.44%), Postives = 63/99 (63.64%), Query Frame = 3
Query:  555 QDRDNA-MPLNLKGGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            ++RD   + L    GSI++ +V   Y       +D VS V+PAGK+VA+VG SGSGK++++RLL R ++  +G I IDG DI E+TLES  + I  V Q
Sbjct:  331 RERDRGRISLKRARGSIEYRHVSLVYDDRHGAAVDDVSLVIPAGKTVALVGQSGSGKTSLVRLLPRLYEATAGEILIDGHDIRELTLESLRRQIAYVGQ 429          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 3
Query:  594 GSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            G+++F++VHFSY +    KIL G++  V +G++VA+VG+SG GKST ++L+ R +D   G+I IDGQDI    +    + IGVV Q
Sbjct:  392 GNLEFNDVHFSYPSRANVKILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQ 477          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: MDR2_CRIGR (Multidrug resistance protein 2 OS=Cricetulus griseus GN=PGY2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  594 GSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            G+++F NVHFSY +    KIL G++  V +G++VA+VG SG GKST ++LL R +D   G + IDGQDI  + +    + IGVV Q
Sbjct:  389 GNLEFKNVHFSYPSRSGIKILKGLNLKVQSGQTVALVGKSGCGKSTTVQLLQRLYDPTEGVVSIDGQDIRTINVRYLREIIGVVSQ 474          
BLAST of EY720090 vs. ExPASy Swiss-Prot
Match: EXP8_STRPN (Putative ABC transporter ATP-binding protein exp8 OS=Streptococcus pneumoniae GN=exp8 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 6.133e-13
Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  501 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESFTKSIGVVPQ 845
            ++V    +F L++E+     ++N     ++ G+I+F++V FSY  +  ILD +SF V  G+++A VG +GSGKS+I+ +L R ++  SG + +D  DI + + E   K+IG+V Q
Sbjct:  309 AMVSAGRVFALIDERTYEPLQENGQA-KVQEGNIRFEHVCFSYDGKHPILDDISFSVNKGETIAFVGHTGSGKSSIINVLMRFYEFQSGRVLLDDVDIRDFSQEELRKNIGLVLQ 422          
The following BLAST results are available for this feature:
BLAST of EY720090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
MSBA_HAES14.696e-1345.88Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURPS4.696e-1340.54Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURP14.696e-1340.54Lipid A export ATP-binding/permease protein msbA O... [more]
MSBA_BURMA4.696e-1340.54Lipid A export ATP-binding/permease protein msbA O... [more]
ABCBA_HUMAN4.696e-1337.80ATP-binding cassette sub-family B member 10, mitoc... [more]
AB22B_ARATH4.696e-1341.59ABC transporter B family member 22 OS=Arabidopsis ... [more]
MSBA_METCA6.133e-1344.44Lipid A export ATP-binding/permease protein msbA O... [more]
MDR3_HUMAN6.133e-1345.35Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
MDR2_CRIGR6.133e-1346.51Multidrug resistance protein 2 OS=Cricetulus grise... [more]
EXP8_STRPN6.133e-1335.65Putative ABC transporter ATP-binding protein exp8 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-H06-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720090 ID=EY720090; Name=EY720090; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGTTCACTTTCTGTGGTGGCATATGTTGTTTTTACCTTGTC
AGTGACACAGTGGCGGACCAAGTTTAGGAAGGCCATGAATAAAGCTGACA
ATGATGCAAGTACAAGGGCAATTGATTCACTAATCAATTATGAGACTGTT
AAATATTTCAACAATGAAGCTTTTGAAGCTGAACAATATGATGAGTTTTT
AAGGAGATACGAAGATGCTGCCTTGAAAACACAAAGAAGTCTTGCTTTTT
TGAATTTTGGTCAAAATGTGATTTTTAGTGCAGCTTTGTCTACAGCTATG
GTTTTGTGCTCACATGGGATTTTGAGTGGCGAGATGACAGTCGGTGATCT
GGTATATTCCTTCTTTGTATACTCTGAATGCAATTGATTGTTTCACTCAT
TAATTATAAATCTGGAACACAGGTTATGGTAAATGGGCTTCTCTTCCAGT
TATCGCTTCCTTTAAATTTCCTTGGCAGTGTTTATCGTGAGACTGTGCAG
AGTCTTGTTGACATGAAGTCAATGTTTCAGTTACTGGAGGAGAAGGCTGA
TATTCAGGACAGAGATAATGCGATGCCTCTGAATTTGAAAGGGGGGAGCA
TCCAGTTTGACAATGTGCACTTTAGTTATCTGACTGAAAGGAAGATTTTA
GATGGGGTATCTTTTGTTGTACCAGCTGGAAAAAGTGTGGCTATTGTTGG
AACTAGTGGCAGTGGCAAGTCCACCATTCTTAGATTGCTCTTCAGGTCTT
TTGACACCCATTCTGGCAGTATAAGGATTGATGGTCAGGATATATGTGAA
GTGACACTGGAAAGCTTTACGAAGTCTATTGGTGTCGTACCACAGATACA
GTGCTTTTTATGATACATATTTCAAACATTCGTTATGGTCGTCTTCAGCA
CAG
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