EY720059

Overview
NameEY720059
Unique NameEY720059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_SYNY3 (Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S   +++++ F   VL SE PVLV+F A  CGPCR+VAP V+ ++Q+Y  ++ VVK++ D NP    +Y I  +PTL++FK GQ
Sbjct:    2 SATPQVSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNTASQYGIRSIPTLMIFKGGQ 85          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_RICPR (Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.304e-15
Identity = 35/87 (40.23%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQETSGK 589
            +  +T+S F N VL+S+ PV+V+F A  CGPC+++ P ++ +++E  D++ V+K++ D NP+   EY I  +PT++LFKNG++   K
Sbjct:    2 VNNVTDSSFKNEVLESDLPVMVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGIRSIPTIMLFKNGEQKDTK 88          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_RHORU (Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.009e-15
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  335 EITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQETSGK 589
            +++++ F   VLK++ P  V+F A  CGPCR  APA+E LA   GD++TV KI+ D NPQ   +Y + G+PTL++FK+GQ  + K
Sbjct:    3 QVSDASFEEDVLKADGPNXVDFWAEWCGPCRQXAPALEELATALGDKVTVAKINIDENPQTPSKYGVRGIPTLMIFKDGQVAATK 87          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.009e-15
Identity = 37/80 (46.25%), Postives = 58/80 (72.50%), Query Frame = 2
Query:  335 EITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            ++T+  F   V+ SE+ VLV+F A  CGPCR+++P ++ LAQEY +++ +VKI+ D NP +  EY I  +PTL+LFK+G+
Sbjct:    6 QVTDFSFEKEVVNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGK 85          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_PORYE (Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.702e-15
Identity = 36/82 (43.90%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            ++++T++ F   V+ +  PVLV+F A  CGPCR+V+P V+ +A+EY   + VVKI+ D NP +  EY I  +PTL++FK G+
Sbjct:    3 VSQVTDASFKQEVINNNLPVLVDFWAPWCGPCRMVSPVVDEIAEEYESSIKVVKINTDDNPTIAAEYGIRSIPTLMIFKAGE 84          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: TRXM_ORYSJ (Thioredoxin M-type, chloroplastic OS=Oryza sativa subsp. japonica GN=TRXM PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 44/114 (38.60%), Postives = 69/114 (60.53%), Query Frame = 2
Query:  245 SRTNLSLKSYNNSLPKLAIRVRCGASSGITEIT---ESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQE 577
            S+  LS+ S +   P  A R  C  S+ + E+    E  + + VL SE PVLVEF A  CGPCR++AP ++ LA+EY  ++   K++ D +P +   Y I  +PT+++FKNG++
Sbjct:   38 SKPRLSVASPSPLRP--ASRFACQCSNVVDEVVVADEKNWDSMVLGSEAPVLVEFWAPWCGPCRMIAPVIDELAKEYVGKIKCCKVNTDDSPNIATNYGIRSIPTVLMFKNGEK 149          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_STRCO (Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 8.753e-15
Identity = 34/82 (41.46%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            +  +T+  F   VLK+++PVLV+F A  CGPCR +AP++E +A EYGD++ +VK++ D NP    +Y +  +PTL +++ G+
Sbjct:    5 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGE 86          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.493e-14
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 2
Query:  305 VRCGASSGITEI---TESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            V C AS  + E+    +S +   VL+SE PV+V+F A  CGPC+L+AP ++ LA+EY  ++ V K++ D  P +  +Y I  +PT++ FKNG+
Sbjct:   65 VVCKASEAVKEVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGE 157          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_RICTY (Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.493e-14
Identity = 33/87 (37.93%), Postives = 60/87 (68.97%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQETSGK 589
            +  +T+  F N VL+S+ PV+V+F A  CGPC+++ P ++ +++E  D++ V+K++ D NP+   EY +  +PT++LFKNG++   K
Sbjct:    2 VNNVTDISFKNEVLESDLPVIVDFWAEWCGPCKMLIPIIDEISKELQDKVKVLKMNIDENPKTPSEYGVRSIPTIMLFKNGEQKDTK 88          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_GRIPA (Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.950e-14
Identity = 34/83 (40.96%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQE 577
            I+++ ++ F   V+ S +PVLV+F A  CGPCR++A  ++ +A +Y D+L VVK++ D NP +  EY I  +PT+++F NG++
Sbjct:    3 ISQVIDTSFHEEVINSRQPVLVDFWAPWCGPCRMIASTIDEIAHDYKDKLKVVKVNTDQNPTIATEYGIRSIPTVMIFINGKK 85          
The following BLAST results are available for this feature:
BLAST of EY720059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
THIO_SYNY32.304e-1545.24Thioredoxin OS=Synechocystis sp. (strain PCC 6803)... [more]
THIO_RICPR2.304e-1540.23Thioredoxin OS=Rickettsia prowazekii GN=trxA PE=3 ... [more]
THIO_RHORU3.009e-1545.88Thioredoxin OS=Rhodospirillum rubrum GN=trxA PE=1 ... [more]
THIO_CYACA3.009e-1546.25Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
THIO_PORYE6.702e-1543.90Thioredoxin OS=Porphyra yezoensis GN=trxA PE=3 SV=... [more]
TRXM_ORYSJ8.753e-1538.60Thioredoxin M-type, chloroplastic OS=Oryza sativa ... [more]
THIO_STRCO8.753e-1541.46Thioredoxin OS=Streptomyces coelicolor GN=trxA PE=... [more]
TRXM_SPIOL1.493e-1440.86Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_RICTY1.493e-1437.93Thioredoxin OS=Rickettsia typhi GN=trxA PE=3 SV=1[more]
THIO_GRIPA1.950e-1440.96Thioredoxin OS=Griffithsia pacifica GN=trxA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-E02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720059 ID=EY720059; Name=EY720059; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGCTCCGTTTTTGTATCACACAAAACTGAAAACAATTCAAA
AAGAAAAGAAAATGCTCTAAAAATCTTTAATCACTTGCAAAATGGATATC
GTCTTCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCC
TGTTCGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCG
CTACAACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGA
ACGAACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAAT
ACGCGTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTG
AGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTC
GTGGCCAATTGATGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATG
GCTCGCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATG
ACGCAAACCCACAACTAATAGAGGAATACAAAATTTATGGAATGCCGACC
TTGATTCTCTTCAAAAATGGGCAAGAAACTTCCGGAAAGCAGGAGGGAAG
GGGCAATTACTAACTCGAACCTTAAAAGTATATTGATACCCTTTTAAAAT
CCAACCCAATTGGCTTAACCCACTTTTAAACTGCTCCCCAAATATAGCTC
TTTTTTCAACACAATTTTGACCTTATTGGCAAAAAACAAAATGGGTAAAT
ATTTACTTTTTCCTTAGTGAAATTTGAATCCTTCCTTACCAAAACCCTGG
AAGGAATTCATTGAATAAATTTGAATTTTGTGACCCAAAACTCATCACCA
ACTTCTCTGACTCCCACCCCCACACGGGTTTTCATTCCTTTTCCTCAAAA
AAAACAAAAGGGGAGCGTT
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