EY720059

Overview
NameEY720059
Unique NameEY720059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            I ++T+++F + V    +  LV+F A  CGPC+++AP +E LA +Y  +  ++K+D D NP    +Y++  +PTLI+FK+GQ
Sbjct:    3 IVKVTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQ 82          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 32/82 (39.02%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            I ++T+++F + V    +  LV+F A  CGPC+++AP +E LA +Y  +  ++K+D D NP    +Y++  +PTLI+FK+GQ
Sbjct:    3 IVKVTDADFDSKVESGVQ--LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQ 82          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_HAEIN (Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  323 SGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S +  I +++F + V+ S+ P+L++F A  CGPC+++AP ++ LA E+  ++ +VK++ D N     ++ +  +PTL+L KNGQ
Sbjct:    2 SEVLHINDADFESVVVNSDIPILLDFWAPWCGPCKMIAPVLDELAPEFAGKVKIVKMNVDDNQATPAQFGVRSIPTLLLIKNGQ 85          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.058e-12
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  347 SEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            + F   +  S +PVLV+F A  CGPC+++AP +E +      ++ VVKID D  P +  +Y+I  +PTL+LFK GQ
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQ 83          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 70.4774 bits (171), Expect = 1.545e-11
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 2
Query:  335 EITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            E T+  F   +L S++ VLV+F A+ CGPC ++ P +E LA +Y  +  + K++ D NP +  +Y I  +PT+++ K G+
Sbjct:    6 EATDKNFQTEILDSDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGK 85          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.636e-11
Identity = 31/67 (46.27%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  374 SERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            SE PV ++F A+ CGPC++VAP+V+ LA E+  RL VVK++ D  P     +++ G+P L+LF  GQ
Sbjct:   12 SELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQ 78          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            I ++T+S F + +       LV+F A  CGPC+++AP +E LA +Y  +  ++K+D D NP    ++++  +PTLI+FK+G+
Sbjct:    3 IVKVTDSNFDDNIQSGVN--LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGE 82          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            I ++T+S F   +    +  LV+F A  CGPC+++AP +E LA +Y  +  ++K+D D NP    ++++  +PTLI+FK+G+
Sbjct:    3 IVKVTDSNFDENIQSGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGE 82          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  320 SSGITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ 574
            S+ I   T+  F   VL +E PVLV+F A  C PC+ +AP +E L+ EY  ++ +VK+D  +      +Y I  +P L++FK+G+
Sbjct:    2 SATIVNTTDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGE 86          
BLAST of EY720059 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.496e-11
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  329 ITEITESEFPNTVLKSERPVLVEFVAN*CGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKIYGMPTLILFKNGQ--ETS 583
            I + T+  F  +   SE  VL +F A  CGPC+++AP +E L QE GD+L +VKID D N +   +Y +  +PTL++ K+G+  ETS
Sbjct:    3 IVKATDQSF--SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETS 87          
The following BLAST results are available for this feature:
BLAST of EY720059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
THIO_STAA89.058e-1239.02Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA39.058e-1239.02Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO_HAEIN9.058e-1235.71Thioredoxin OS=Haemophilus influenzae GN=trxA PE=3... [more]
THIO1_SYNY39.058e-1242.11Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO_CHLLT1.545e-1136.25Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIO1_CHLTE2.636e-1146.27Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_STAS13.442e-1136.59Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_STAHJ3.442e-1136.59Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO2_CORNE3.442e-1137.65Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_BACSU4.496e-1142.53Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-E02-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720059 ID=EY720059; Name=EY720059; organism=Citrus sinensis; type=EST; length=919bp
CCACGCGTCCGCTCCGTTTTTGTATCACACAAAACTGAAAACAATTCAAA
AAGAAAAGAAAATGCTCTAAAAATCTTTAATCACTTGCAAAATGGATATC
GTCTTCTCCAACTCCACTTTATTGTTCAGACAACAACCACTGGTTGCTCC
TGTTCGTACAGTTACTGGGACCCACAGGCAACAGAACATCATCACCAGCG
CTACAACAACAACAACGTCGTCAAAGAATCAGCTATTGTTCGGGTCTCGA
ACGAACCTCTCACTAAAGTCTTATAATAATTCGCTTCCCAAGTTGGCAAT
ACGCGTACGCTGCGGTGCTAGCAGTGGCATAACGGAGATTACCGAAAGTG
AGTTCCCAAACACGGTCTTGAAATCTGAGCGTCCGGTTCTTGTCGAGTTC
GTGGCCAATTGATGCGGTCCTTGCCGCTTGGTTGCTCCCGCCGTCGAATG
GCTCGCCCAGGAATACGGAGACAGATTGACTGTCGTAAAGATTGATCATG
ACGCAAACCCACAACTAATAGAGGAATACAAAATTTATGGAATGCCGACC
TTGATTCTCTTCAAAAATGGGCAAGAAACTTCCGGAAAGCAGGAGGGAAG
GGGCAATTACTAACTCGAACCTTAAAAGTATATTGATACCCTTTTAAAAT
CCAACCCAATTGGCTTAACCCACTTTTAAACTGCTCCCCAAATATAGCTC
TTTTTTCAACACAATTTTGACCTTATTGGCAAAAAACAAAATGGGTAAAT
ATTTACTTTTTCCTTAGTGAAATTTGAATCCTTCCTTACCAAAACCCTGG
AAGGAATTCATTGAATAAATTTGAATTTTGTGACCCAAAACTCATCACCA
ACTTCTCTGACTCCCACCCCCACACGGGTTTTCATTCCTTTTCCTCAAAA
AAAACAAAAGGGGAGCGTT
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