EY720039

Overview
NameEY720039
Unique NameEY720039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9464 contig Csv1_Contig9464:1..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720039 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 59/219 (26.94%), Postives = 91/219 (41.55%), Query Frame = 2
Query:  137 ASLSHSNGTIPAEFVRPEKEQP---ASATYHGPAPEIPTIDLDDPVQD-RLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKE-VYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWP--PSSINYRFWPNNPPSYRAVNEEYAKYMREV----VDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALG 760
            A++      IP++F+ PE E P   A+   H P  +I  +   DP     + R + EA    G FQV NHGI ++L+         FF +P  EK+     P ++    GY +        K  W + L  R  P  P+ +           +R + E YA+Y  E+    ++ +               +   G D I   +++NYYPPC RP   LG
Sbjct:    8 AAVLSGRADIPSQFIWPEGESPTPDAAEELHVPLIDIGGMLSGDPAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRHPGES---CGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPLETLG 220          
BLAST of EY720039 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.182e-11
Identity = 61/245 (24.90%), Postives = 103/245 (42.04%), Query Frame = 2
Query:  143 LSHSNGTIPAEFVRPEKEQPASATYHGPAPEIPTIDL------DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWPPSSIN--------YRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGVVATLIFPPSRSCAHES--SGLQSF 829
            L+  +  IP +FV P+ E+P++        ++P IDL      D  +     R +++A+ + G F +TNHG+   L+ +       FF+ P  EK+   R     +  GY +        K  W + L  +  P   I+         +   +    +  V +EYA+ M  +  K+               KE    +D + + ++NYYP C +P+LALG       P S +  H+    GLQ F
Sbjct:   30 LNQHSHHIPQQFVWPDHEKPSTDVQ---PLQVPLIDLAGFLSGDSCLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFKAPACEKQKAQRKWG--ESSGYASSFVGRFSSKLPWKETLSFKFSPEEKIHSQTVKDFVSKKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFF--EDSDSIFRLNYYPQCKQPELALG-TGPHCDPTSLTILHQDQVGGLQVF 266          
BLAST of EY720039 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.182e-11
Identity = 66/212 (31.13%), Postives = 95/212 (44.81%), Query Frame = 2
Query:  164 IPAEFVRPEKEQPASATYHGPAPE----IPTIDL-----DDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQE-EKEVYSRPADAKDVQGYGTKLQKEVEGKKSWVDHL--FHRVWPPSSINYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALGV 763
            IP+ F  P    PA+ T   P       IPTIDL     D   +  LV  I +A+ +WG FQV NHGIP D++ K+    +EF E   E +K  YSR   +K V  Y +          +W D L  +    PP         + P +   +  EY+K + ++   LF              K+    + +  +L  +YYPPCP+PDL LG+
Sbjct:   38 IPSIFRAP----PATLTSPKPPSSSDFSIPTIDLKGGGTDSITRRSLVEKIGDAAEKWGFFQVINHGIPMDVLEKMIDGIREFHEQDTEVKKGFYSRDPASKMV--YSSNFDLFSSPAANWRDTLGCYTAPDPPRP------EDLPATCGEMMIEYSKEVMKLGKLLFELLSEALGLNTNHLKDMDCTNSL--LLLGHYYPPCPQPDLTLGL 235          
BLAST of EY720039 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 59/219 (26.94%), Postives = 90/219 (41.10%), Query Frame = 2
Query:  137 ASLSHSNGTIPAEFVRPEKEQP---ASATYHGPAPEIP-TIDLDDPVQDRLVRSIAEASREWGIFQVTNHGIPSDLIGKLQAVGKEFFELPQEEKE-VYSRPADAKDVQGYGTKLQKEVEGKKSWVDHLFHRVWP--PSSINYRFWPNNPPSYRAVNEEYAKYMREV----VDKLFTYXXXXXXXXXXXXKEAAGGDDIEYMLKINYYPPCPRPDLALG 760
            A++      IP++F+ PE E P   A+   H P   I   +  D      + R + EA    G FQV NHGI ++L+         FF +P  EK+    RP ++    GY +        K  W + L  R  P  P+ +           +R + E YA+Y  E+    ++ +               +   G D I   +++NYYPPC RP   LG
Sbjct:    8 AAVLSGRSDIPSQFIWPEGESPTPDAAEELHVPLINIGGMLSGDAAAAAEVTRLVGEACERHGFFQVVNHGIDAELLADAHRCVDNFFTMPLPEKQRALRRPGES---CGYASSFTGRFASKLPWKETLSFRSCPSDPALVVDYIVATLGEDHRRLGEVYARYCSEMSRLSLEIMEVLGESLGVGRAHYRRFFEGNDSI---MRLNYYPPCQRPLETLG 220          
The following BLAST results are available for this feature:
BLAST of EY720039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
GAO1D_WHEAT9.049e-1226.94Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX3_ARATH1.182e-1124.90Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
ACCH1_ARATH1.182e-1131.131-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAO1A_WHEAT1.543e-1126.94Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-B12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720039 ID=EY720039; Name=EY720039; organism=Citrus sinensis; type=EST; length=913bp
CCACGCGTCCGCGTTACTGCGTCACAGTCGCAGGAAAGGCGCAAGCCAAG
AAAGAGAGAGGGAGAGAAGGAAAAGAAAAGTGGTGGGGTTTTGCTGGAAA
ATAAAATTAATGGAGGTGGAGAGGGTCCAAGCCATTGCTTCCTTATCCCA
TTCAAATGGCACAATTCCAGCAGAGTTCGTAAGACCCGAAAAAGAACAGC
CAGCAAGCGCAACGTACCACGGCCCCGCTCCTGAAATCCCCACGATCGAT
CTCGACGACCCCGTTCAAGACAGACTCGTACGTTCCATCGCGGAAGCCAG
CCGGGAGTGGGGGATTTTCCAGGTTACAAACCACGGGATACCTAGTGACC
TCATCGGTAAACTGCAAGCCGTCGGCAAAGAATTTTTTGAGCTCCCTCAG
GAAGAGAAAGAAGTGTATTCTCGTCCGGCTGATGCAAAAGACGTGCAAGG
ATACGGCACAAAGTTACAGAAAGAAGTCGAAGGAAAGAAATCTTGGGTTG
ATCATCTCTTCCACAGGGTTTGGCCTCCGTCTTCTATCAACTACCGCTTT
TGGCCCAACAACCCTCCTTCTTACCGAGCGGTGAATGAGGAGTATGCAAA
GTACATGAGGGAGGTGGTGGATAAGTTGTTTACGTATCTTTCGTTGGGAC
TGGGTGTCGAAGGAGGTGTTTTGAAAGAAGCAGCGGGAGGAGACGACATT
GAGTACATGCTCAAGATTAATTACTATCCGCCATGCCCACGTCCTGATCT
TGCTCTTGGAGTGGTGGCCACACTGATCTTTCCGCCCTCACGTTCTTGTG
CCCATGAAAGTTCTGGTCTGCAGTCTTTTAAGAGACCGTTGGATCGATGC
CAGTACAATCCGACGCTCTCATCATCACATCGGGGACAGATCGAGATCTG
AGCATGGCAGTAC
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