EY720023

Overview
NameEY720023
Unique NameEY720023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11145 contig Csv1_Contig11145:1..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP4B_DICDI (AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 8.877e-39
Identity = 97/290 (33.45%), Postives = 171/290 (58.97%), Query Frame = 1
Query:   16 DIMNLLEDRLQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANE----SNTYEIVTELCEYAANVDIPIARESIRAVGKIA------LQQYDVN-AIVDRL-LQFLEMEKDY-------------VTAEALVLVKDLLRKYPQ-------WSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILES-LTENWEREPSAEXRLHLLXAVMKCFFRR 783
            DI+NLL+DRL H+N A+ L+TIK+FL  T    ++ +QVYERIK PL+TL+ SS S E S+ +L H+H+L+ R+P +F   YKHFYC++++P Y+K LK+++L  +A+      +  EI+ EL EY    D  + ++SI A+  IA       ++Y ++ ++++++ L +L +  +              + +  L+ +KD LR +P+       + ++ +  +GS+S+  +  P A  +++WMLGE      ++PYI+E    E ++++P+   +  LL   +K FF R
Sbjct:  246 DILNLLDDRLSHSNSALTLSTIKIFLKYTDEFEEIQEQVYERIKEPLITLMESSESNETSFTILHHIHLLMSRSPRLFNRYYKHFYCKFDDPLYIKTLKVQVLKEIASNQTFIESIDEILQELSEYVYEGDHSLCKQSINAITVIAQKHKNTQEKYPIDESVLEKIFLPYLSVSSNLGGAGDDNISINEGILSFILISLKDFLRVFPKHLKTVLPYINENLIGIGSVSNYTL-PPSANESVLWMLGESPNSQVNSPYIIEEFFNEKFDQQPTF-VKTQLLTTSLKVFFDR 533          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP4B1_MOUSE (AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.123e-36
Identity = 87/258 (33.72%), Postives = 142/258 (55.04%), Query Frame = 1
Query:   13 FDIMNLLEDRLQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHD-CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEREPSAEXRLHLLXAVMKCFFRR 783
            FDI+NLL+  L+ ++  VV+   K+FL L      V   V  R+K PLL   SS S E  +A L H+  ++   P  F+S YK F+C Y+EP Y+K  K+E+L  + N+ N  +++ EL  Y  +V    A+ +I A+G IA    D    V  L + L + ++++T   +   +DL+   PQ +   C A+ G    +N+Q+ + K ALIW+LG + + + +APY+LE   ++ + E     ++ LL A+M+ F  R
Sbjct:  234 FDILNLLDSYLKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHVRQVLHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGNIAKTYTD--QCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPG--CEENIQDSEGKQALIWLLGVHGEKIPNAPYVLEDFVQSVKSETFPAVKMELLTALMRLFLSR 487          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP4B1_HUMAN (AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4B1 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 9.186e-36
Identity = 87/258 (33.72%), Postives = 141/258 (54.65%), Query Frame = 1
Query:   13 FDIMNLLEDRLQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHD-CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEREPSAEXRLHLLXAVMKCFFRR 783
            FDI+NLL+  L+ ++  VV+   K+FL L      V   V  R+K PLL   SS S E  +  L H+  ++   P  F+S YK F+C Y+EP Y+K  K+E+L  + N+ N  +++ EL  Y  +V    A+ +I A+G IA    D    V  L + L + ++++T   +   +DL+   PQ +   C A+ G    +N+Q+ + K ALIW+LG + + + +APY+LE   EN + E     ++ LL A+++ F  R
Sbjct:  234 FDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQTDVLVRVKGPLLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGGIARTYTD--QCVQILTELLGLRQEHITTVVVQTFRDLVWLCPQCTEAVCQALPG--CEENIQDSEGKQALIWLLGVHGERIPNAPYVLEDFVENVKSETFPAVKMELLTALLRLFLSR 487          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP1B1_SCHPO (AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe GN=apl2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.058e-31
Identity = 77/245 (31.43%), Postives = 144/245 (58.78%), Query Frame = 1
Query:   40 RLQHANGAVVLATIKVFL-HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEREPSAEXRLHLLXAVMK 768
            + QHAN  VVL+ +KV + H+ L  +D    +Y+++  PLLTL+S+ S E  Y  L ++++++ + P IF    + F+C+YN+P Y+K  KL+++T +A + N  E ++EL  Y + V++   +++I+ +G +AL+   V N  +   L+  E+   Y+  E  V+++ +LRKYPQ   D +    S   + + +P+A++++ W+LGE+S  +  +  +L  +      E   + +L LL AV+K
Sbjct:  251 QFQHANSGVVLSAVKVIMVHIPLFSSDFTDFLYKKMAPPLLTLLSTDS-EIQYVALRNINLILQKRPSIFDVKTRVFFCKYNDPLYIKMEKLKIITMLACDENINETISELRAYVSEVELEFVKQTIKCLGDVALKVPSVINDCISIFLEIYELNISYMVQEVTVVMETVLRKYPQ-KIDLLLPYLSRVIEELGDPRARSSMAWILGEFSHVIPTSSKLLSEMISTMADE-DLQIQLALLTAVVK 492          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP2B_YEAST (AP-2 complex subunit beta OS=Saccharomyces cerevisiae GN=APL1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.598e-26
Identity = 77/259 (29.73%), Postives = 144/259 (55.60%), Query Frame = 1
Query:   16 DIMNLLEDRLQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM-RAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIA--LQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP-QWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEREPSAEXRLHLLXAVMKCFFR 780
            +++ L    LQ  N  VVL ++K  ++L   +  + + + E++   ++ L+    PE  + VL ++ +L++ R   +   D  +F+ +YN+P Y+K  KLE L  +AN+     I+ EL +YA ++DI ++R+S+RA+G +A  L +  V+  V  LL  LE   DYV  E + + +++LRKYP  +  +   +V    ++ VQEP++K A+IW++ +YS  + +   +    + N   E + E +  +L + +K F R
Sbjct:  249 EMIELALPYLQQVNTYVVLNSLKFIMYLLNYVDVIKETLAEKLSNSVIALLDK-PPELQFLVLRNVILLLLSRESSLLRLDISYFFIEYNDPIYIKDTKLECLYLLANKETLPRILEELEQYATDIDIQMSRKSVRAIGNLAVKLDEDSVHDCVAVLLDLLEFGVDYVVQEIISVFRNILRKYPNNFKANVTELVK--HTEVVQEPESKNAMIWIITQYSDVIPNYLELFRVFSSNMFSE-TLEVQFSILNSAIKFFIR 503          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP1B1_YEAST (AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae GN=APL2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.682e-21
Identity = 74/263 (28.14%), Postives = 141/263 (53.61%), Query Frame = 1
Query:   16 DIMNLLEDRLQHANGAVVLATIKVFL-HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE---IVTELCEYAANVDIPIARESIRAVGKIAL---QQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP---QWSHDCIAVVGSISSQNV--QEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEREPSAEXRLHLLXAVMK 768
            DI++ +   LQH N AVVLATIKV + +L       +  + +R+ +  ++L+S+  PE  Y  L ++ I++ + P +   + + FY ++N+P YVK  K+++L  + + SN  +   ++TEL EYA   +      +I+A+ ++ +   Q+  V+ ++D LL+ LE  +D +  +  + + DLLR  P   + +    AV  + S+  V  Q   AK   +W+LG++  +  D    +    EN+ +E  A  ++ LL  +++
Sbjct:  253 DIIDRVTAHLQHVNPAVVLATIKVIVRNLPQIEYSSNSLIMKRLSSAFVSLMST-PPEMQYVALKNIRIILEKYPELLTKELRIFYVKFNDPLYVKLEKIDILVRLVDPSNLKQCTLLLTELKEYAMEYEPEFVSRAIQALSQLGIKYAQESFVSKVLDILLELLE-RQDTIKDDCCISLCDLLRHCPGNDKMAKQVCAVFNTWSNPEVLLQSDIAKCNYVWLLGQHPNNFSDLESKINIFIENFVQE-EALTQMSLLMTIVR 512          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B2_MOUSE (AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.574e-19
Identity = 68/229 (29.69%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWERE 723
            LQ  + AVV+A  +++ HL         +V    KA L+ L+ S S E  Y VL ++  + ++   +F    K FY +  +P+ +K LKLE+LT +ANE+N   ++ E   Y  ++D      +I+A+G+ A     V +  ++ L+Q L    + V AE++V++K LL+  P    + I  +  + + N+Q P A+A+++W++GEY + + + AP +L  + +++  E
Sbjct:  313 LQSRSAAVVMAVAQLYFHLAPKA-----EVGVIAKA-LVRLLRSHS-EVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKL-TDNIQVPMARASILWLIGEYCEHVPKIAPDVLRKMAKSFTAE 533          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B2_HUMAN (AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.574e-19
Identity = 68/229 (29.69%), Postives = 126/229 (55.02%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWERE 723
            LQ  + AVV+A  +++ HL         +V    KA L+ L+ S S E  Y VL ++  + ++   +F    K FY +  +P+ +K LKLE+LT +ANE+N   ++ E   Y  ++D      +I+A+G+ A     V +  ++ L+Q L    + V AE++V++K LL+  P    + I  +  + + N+Q P A+A+++W++GEY + + + AP +L  + +++  E
Sbjct:  313 LQSRSAAVVMAVAQLYFHLAPKA-----EVGVIAKA-LVRLLRSHS-EVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLEVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLLSNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKL-TDNIQVPMARASILWLIGEYCEHVPRIAPDVLRKMAKSFTAE 533          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B1_HUMAN (AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.128e-16
Identity = 61/229 (26.64%), Postives = 120/229 (52.40%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWERE 723
            LQ  N AVV+A  +++ H++       +     I   L+ L+ S   E  Y VL ++  + ++   +F    K FY +  +P+ +K LKLE+LT +ANE+N   ++ E   Y  + D   A  +I+ +G+ A    +V +  ++ L+  L    + V AE++V++K LL+  P    + I  +  +   ++  P A+A+++W++GE  + + + AP +L  + +++  E
Sbjct:  308 LQSRNAAVVMAVAQLYWHIS------PKSEAGIISKSLVRLLRSNR-EVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATNILEVTDTCLNGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKL-LDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTSE 528          
BLAST of EY720023 vs. ExPASy Swiss-Prot
Match: AP3B1_CANFA (AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.801e-15
Identity = 60/229 (26.20%), Postives = 118/229 (51.53%), Query Frame = 1
Query:   43 LQHANGAVVLATIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWERE 723
            LQ  N AVV+A  +++ H++       +     I   L+ L+ S   E  Y VL ++  + ++   +     K FY +  +P+ +K LKLE+LT +ANE+N   ++ E   Y  + D   A  +I+ +G+ A    +V +  +  L+  L    + V AE++V++K LL+  P    + I  +  +   ++  P A+A+++W++GE  + + + AP +L  + +++  E
Sbjct:  308 LQSRNAAVVMAVAQLYWHIS------PKSEVGIISKSLVRLLRSNR-EVQYIVLQNIATMSIQRKGMLEPYLKSFYVRSTDPTMIKILKLEILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSISEVTDTCLSGLVCLLSNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKL-LDSITVPVARASILWLIGENCERVPKIAPDVLRKMAKSFTNE 528          
The following BLAST results are available for this feature:
BLAST of EY720023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
AP4B_DICDI8.877e-3933.45AP-4 complex subunit beta OS=Dictyostelium discoid... [more]
AP4B1_MOUSE4.123e-3633.72AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4... [more]
AP4B1_HUMAN9.186e-3633.72AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4... [more]
AP1B1_SCHPO3.058e-3131.43AP-1 complex subunit beta-1 OS=Schizosaccharomyces... [more]
AP2B_YEAST6.598e-2629.73AP-2 complex subunit beta OS=Saccharomyces cerevis... [more]
AP1B1_YEAST1.682e-2128.14AP-1 complex subunit beta-1 OS=Saccharomyces cerev... [more]
AP3B2_MOUSE1.574e-1929.69AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3... [more]
AP3B2_HUMAN1.574e-1929.69AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3... [more]
AP3B1_HUMAN2.128e-1626.64AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3... [more]
AP3B1_CANFA1.801e-1526.20AP-3 complex subunit beta-1 OS=Canis familiaris GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-A07-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720023 ID=EY720023; Name=EY720023; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGATTTGACATCATGAATCTCCTTGAAGATAGACTTCAACA
TGCAAATGGTGCTGTTGTTTTAGCCACCATCAAAGTTTTTCTTCATTTGA
CCTTATCCATGACCGATGTTCATCAGCAGGTTTACGAACGCATCAAAGCT
CCTTTGCTAACCTTAGTGAGTTCTGGAAGTCCGGAGCAATCTTATGCAGT
TTTAAGCCACCTGCATATTTTGGTGATGCGTGCACCCTTTATATTTGCCT
CAGACTACAAACACTTTTATTGCCAGTATAATGAACCTTCTTATGTCAAG
AAGCTGAAGCTTGAAATGTTGACTGCAGTTGCAAATGAGAGCAATACATA
TGAAATTGTAACGGAATTATGCGAATATGCTGCGAATGTCGATATCCCCA
TTGCAAGAGAGTCTATTAGGGCTGTTGGAAAAATAGCTCTGCAGCAGTAT
GATGTGAATGCTATTGTTGATAGGCTTCTTCAGTTTCTGGAAATGGAAAA
GGACTATGTGACTGCTGAAGCTCTGGTGCTTGTAAAAGATTTACTTAGAA
AATATCCACAGTGGAGTCATGATTGCATTGCAGTTGTTGGGAGTATCAGC
AGCCAAAATGTTCAGGAACCCAAGGCGAAGGCAGCTCTTATATGGATGTT
GGGGGAATATTCTCAGGATATGCAAGATGCTCCTTACATTTTAGAAAGTT
TAACCGAAAATTGGGAAAGAGAGCCTTCAGCAGAGGNTCGTTTACATCTT
CTCANCGCTGTAATGAAGTGTTTTTTCAGAAGGCACCTGAGACTCAAAAA
GTCTTGGGAGCTGCTTTGGCTGCTGGTCTGGCTGATTTTCACCAGGATGT
CATGATAGGCCTTATTCTACATAGGCTTNNTGCATATATGTATCTGTAGC
AAAACGAGTTGTGACCTNTCAAAGCAGCTGNT
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