EY693259

Overview
NameEY693259
Unique NameEY693259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispG PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.767e-30
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  VK+ +  +   + LI LIK  GRW +P
Sbjct:  298 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGHISLYRGREEVKK-VPEDQGVEELINLIKADGRWVDP 407          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.837e-30
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +   + LI LIK  GRW +P
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWVDP 406          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_TRIEI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+ +  E+RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +      + LI LIK  GRW EP
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLENVLHEVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQSGYISLYRGREEIKK-VHESQGVEELINLIKADGRWVEP 406          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.285e-29
Identity = 60/111 (54.05%), Postives = 80/111 (72.07%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+E+  ++RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +   + LI LIK  GRW +P
Sbjct:  295 YSILQALGLRKTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWIDP 404          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.678e-29
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EY++CPSCGRTLF+L+++  ++R  TSHL G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  +    ALIQLI++ G W +P
Sbjct:  288 YSILQSLGLRKTMVEYIACPSCGRTLFNLEDVLHKVRNATSHLKGLDIAVMGCIVNGPGEMADADYGYVGKGPGIIALYRGREEIRK-VPEKEGVQALIQLIQEDGLWVDP 397          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.192e-29
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+++  E+RE T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +        LI LIK  GRW +P
Sbjct:  294 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLHEVREATKHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYIALYRGREEIKR-VPETDGVQELINLIKADGRWVDP 403          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_MICAN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=ispG PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.862e-29
Identity = 61/111 (54.95%), Postives = 79/111 (71.17%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEP 593
            +++LQ   +R T  EYV+CPSCGRTLF+L+++  ++R  T HL G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR    E  ++ LI LIK  GRW EP
Sbjct:  297 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLQQVRAATQHLTGLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKRVPESEGVSE-LINLIKADGRWVEP 406          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_SYMTH (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Symbiobacterium thermophilum GN=ispG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.427e-12
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIK 569
            + +L+   +R      +SCPSCGR   DL +++ E+  +  H+   +++A+MGC+VNGPGE A+AD    GG  G   LYVG   V++    E   +AL++L++
Sbjct:  247 YEILKALGLRTRGINIISCPSCGRVQIDLVKVANEVERRLQHIDVPLNVAVMGCVVNGPGEAAEADVALFGG-KGVGMLYVGGERVRK-TTEEEMVEALVELVE 348          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_KOCRD (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=ispG PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.864e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  267 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVK 518
            +LQ   +R  K E VSCPSCGR   D+ +++ E+ E  +HL   + +A+MGC+VNGPGE  +AD G   G  GK  ++V   V+K
Sbjct:  265 ILQSLGLRPRKLEIVSCPSCGRAQVDVYKLAEEVNEGLAHLTVPLRVAVMGCVVNGPGEAREADLGVASG-NGKGQIFVRGEVIK 348          
BLAST of EY693259 vs. ExPASy Swiss-Prot
Match: ISPG_PSEMY (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Pseudomonas mendocina (strain ymp) GN=ispG PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.179e-12
Identity = 39/121 (32.23%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  261 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEXATDALIQLIKDHGRWAEPPAEEXDMVI 620
            F++L+  R+R+    +++CPSC R  FD+ +   E+  +   L   + +A++GC+VNGPGE  +A  G  GG+P  +    GK   K  +  E   D L +LI+D  + AE  A +  +++
Sbjct:  252 FDILKSLRLRSRGINFIACPSCSRQNFDVVKTMNELESRVEDLLVPLDVAVIGCVVNGPGEAKEAHIGLTGGSPNNLVYIDGKPASK--LTNENLVDELEKLIRD--KAAEKAAADAAVIV 368          
The following BLAST results are available for this feature:
BLAST of EY693259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
ISPG_CYAP45.767e-3054.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP79.837e-3054.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TRIEI1.285e-2954.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA51.285e-2954.054-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS91.678e-2952.254-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY32.192e-2954.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_MICAN2.862e-2954.954-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYMTH1.427e-1236.544-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_KOCRD1.864e-1243.534-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PSEMY3.179e-1232.234-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-009-F09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693259 ID=EY693259; Name=EY693259; organism=Citrus sinensis; type=EST; length=934bp
CCACGCGTCCGCATGATTTACCCTTTAATGAAGATAAAATTGGCAGAGTA
CAGGCAGCTAGGAGGCTATTTGAGTATCTATCAGAAAATAATCTAAACTT
CCCTGTAATTCACCATATTCAGTTTCCGAATGGGATTCACAGGGATGACT
TGGTCATTGGTGCCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGACTT
GGAGATGGTTTGCTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTGAG
GGACACATCTTTCAACTTACTACAAGGTTGCAGAATGAGGAATACAAAGA
CGGAGTATGTCTCATGTCCATCATGTGGTAGAACTTTGTTTGACCTTCAA
GAAATAAGTGCAGAGATACGAGAGAAAACATCGCACTTGCCCGGTGTTTC
GATTGCTATCATGGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATG
CAGACTTTGGGTATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTC
GGGAAGACTGTGGTGAAGCGTGGTATTGCAATGGAGCANGCAACCGATGC
CTTGATCCAACTAATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAG
AAGAGTANGATATGGTAATTTCCATCAACAGATATACAATAAAGACTCAG
TTGAAAGGAGACCACCATACCCCAGCTGNTGTATATTAAATTCACATGGC
ACAAAGACTACACAGTAATAGCAGATCATATAAATTTTTCCGTCAGATGG
AGCATCTATAGTTCACCAAGGAAAGCGTTATATGTTCCCTCAGTGTATGC
AGATAAAGCTGTTACCACTCCATTAGTAACAGGCCCAATGTTTCTAACTT
TNGTTTCCTTACCAAACCAATAATAATGGATTCCTATGGGATTTATAGCT
CTAGGGAACCACCTGAATATGGCTGGGGGGTTCC
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