EY693082

Overview
NameEY693082
Unique NameEY693082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 2.634e-88
Identity = 163/210 (77.62%), Postives = 178/210 (84.76%), Query Frame = 2
Query:   53 MATSTMALSSSFVGKAVNLAPSGNEL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAF 667
            MATST+   S+F G+ + L P  NEL      NGGR+SMR+T   +  S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVLMGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DP AF
Sbjct:    1 MATSTIQ-QSAFAGQTL-LKPQ-NELVRKVGGNGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.350e-78
Identity = 133/180 (73.89%), Postives = 151/180 (83.89%), Query Frame = 2
Query:  155 RKTGSKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            +KT +K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQ+I+A  A QV+LMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP  FAELKV
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV 199          

HSP 2 Score: 38.891 bits (89), Expect = 2.350e-78
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++A   MFGFF QAIVTGKGP +
Sbjct:  203 KNGRLASFSMFGFFVQAIVTGKGPVQ 228          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.348e-77
Identity = 131/169 (77.51%), Postives = 143/169 (84.62%), Query Frame = 2
Query:  179 SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   GVKFGE VWFKAGAQIFSEGGLDYLG+P+LIHAQ+I+A  A QVVLMG +EGYR+ GGP GE  DPLYPG SFDPLGLADDP  FAELKV
Sbjct:   34 SAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKV 202          

HSP 2 Score: 38.891 bits (89), Expect = 3.348e-77
Identity = 17/26 (65.38%), Postives = 21/26 (80.77%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM   FGFF QAIVTGKGP +
Sbjct:  206 KNGRLAMFSCFGFFVQAIVTGKGPIQ 231          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 6.218e-76
Identity = 148/206 (71.84%), Postives = 158/206 (76.70%), Query Frame = 2
Query:   89 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKVXKSEWKGG 706
            + K   L P  + L      +M K  +KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW  +V+LMGAVEGYRIA GPLGEVTDPLYP GSFD LGLA+D  AFAELKV   E K G
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKV--KELKNG 220          

HSP 2 Score: 31.5722 bits (70), Expect = 6.218e-76
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM  MFGFF QAIV+ K   E
Sbjct:  218 KNGRLAMFSMFGFFVQAIVSRKDRLE 243          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.507e-74
Identity = 135/212 (63.68%), Postives = 159/212 (75.00%), Query Frame = 2
Query:   56 ATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP-LGEVTDPLYPGGS-FDPLGLADDPGAFAELKV 682
            +++T+  ++ F+G+  N  P  + ++ G         ++   S   WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +   V F E VWFKAG+QIFS+GGLDYLGNP+L+HAQSILA+   QVVLMG VEG+RI G P +GE  D LYPGG  FDPLGLADDP  FAELKV
Sbjct:    9 SSTTVVKATPFLGQTKNANPLRDVVAMGS--------ARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGND-LYPGGQYFDPLGLADDPTTFAELKV 211          

HSP 2 Score: 42.743 bits (99), Expect = 1.507e-74
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXET-XPTLG*PCQIHAW 809
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AW
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAW 255          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.342e-74
Identity = 139/215 (64.65%), Postives = 161/215 (74.88%), Query Frame = 2
Query:   53 MATSTMALSS-SFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSP-WYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGS-FDPLGLADDPGAFAELKV 682
            MA++ MA +S + V K   L+  G   S      +    +  ++ G+  WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  GV+F E VWFKAG+QIFSEGGLDYLGNP+L+HAQSILA+   QV+LMG VEG+RI G   +GE  D LYPGG  FDPLGLADDP  FAELKV
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGND-LYPGGQYFDPLGLADDPVTFAELKV 214          

HSP 2 Score: 42.743 bits (99), Expect = 3.342e-74
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXET-XPTLG*PCQIHAW 809
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AW
Sbjct:  218 KNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAW 258          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.047e-66
Identity = 119/167 (71.26%), Postives = 136/167 (81.44%), Query Frame = 2
Query:  194 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG--EVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  GV+FGE VWFKAGAQIF++GGL+YLGN SLIHAQSI+A  A QVVLMG  E YR  GG  G  +  D LYPGG FDPLGLADDP  FAELKV
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKV 199          

HSP 2 Score: 36.5798 bits (83), Expect = 1.047e-66
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM    GFF QAIVTGKGP +
Sbjct:  203 KNGRLAMFSCLGFFVQAIVTGKGPVQ 228          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.244e-64
Identity = 119/177 (67.23%), Postives = 135/177 (76.27%), Query Frame = 2
Query:  158 KTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +G+KFG+A +WFKAGA IF +GGL+YLGNPSLIHAQ+I+A  A QVVLMG VEGYR+ GGP GE  DPLYPG +FDPLGLADDP  FAELKV
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKV 220          

HSP 2 Score: 38.5058 bits (88), Expect = 1.244e-64
Identity = 21/42 (50.00%), Postives = 27/42 (64.29%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA 812
            +NG++AM    GFF QAIVTGKGP E     L  P + +A+A
Sbjct:  224 KNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFA 265          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.150e-50
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 2
Query:  395 ELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            ELL +NGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG +EGYR+ GGPLGE  DPLYPG +FDPLGLADDP A AELKV
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKV 96          

HSP 2 Score: 45.0542 bits (105), Expect = 3.150e-50
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXET-XPTLG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AWA      PGK
Sbjct:  100 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.388e-37
Identity = 88/180 (48.89%), Postives = 103/180 (57.22%), Query Frame = 2
Query:  167 SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI  G   +  D L+PGG FDPLGLA DP   A LKV
Sbjct:   49 SKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKV 223          

HSP 2 Score: 36.965 bits (84), Expect = 1.388e-37
Identity = 16/26 (61.54%), Postives = 20/26 (76.92%), Query Frame = 3
Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM  M GFF QA VTG+GP E
Sbjct:  227 KNGRLAMFAMLGFFIQAYVTGEGPVE 252          
The following BLAST results are available for this feature:
BLAST of EY693082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB21_SILPR2.634e-8877.62Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_CHLRE2.350e-7873.89Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO3.348e-7777.51Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO6.218e-7671.84Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB23_SOLLC1.507e-7463.68Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU3.342e-7464.65Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE1.047e-6671.26Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA1.244e-6467.23Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY3.150e-5086.46Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB26_ARATH1.388e-3748.89Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-007-E12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693082 ID=EY693082; Name=EY693082; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCGAGAACACTAGAGCTCACCAACAACTCCGATCATTGTA
AAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCT
GTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCCGGAGCTTTTGCTGAGCTCAAGGTAANGAAATCAGAATGGAAA
GGTGGCTATGNNTCTCATGTTTGGTTTCTTTCGTCAGGCCATTGTCACCG
GCAAGGGACCGNTAGAGACTTGNCCGACACTTGGCTGACCCTGTCAAATA
CATGCCTGGGCTACGCACCCACTTTGTCCCGGAAAGTGAGCTCGGNTGAT
AGAAGTTTTCTCTTTCNGNTTCTGAATTCATGNAATCTGTGGGAGCCNTG
GAGCTTT
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