EY693082 | Citrus Genome Database

Overview


Name	EY693082
Unique Name	EY693082
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	907

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.031e-34
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFAELKV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 211

HSP 2 Score: 45.8246 bits (107), Expect = 1.031e-34
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AWA      PGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.031e-34
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFAELKV
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 211

HSP 2 Score: 45.8246 bits (107), Expect = 1.031e-34
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AWA      PGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.749e-34
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFAELKV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213

HSP 2 Score: 45.0542 bits (105), Expect = 1.749e-34
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     +  P   +AWA      PGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.749e-34
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFAELKV
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 213

HSP 2 Score: 45.0542 bits (105), Expect = 1.749e-34
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     +  P   +AWA      PGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.369e-34
Identity = 58/62 (93.55%), Postives = 60/62 (96.77%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DP AFAELKV
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKV 62

HSP 2 Score: 44.669 bits (104), Expect = 2.369e-34
Identity = 26/51 (50.98%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AW+      PGK
Sbjct:   66 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.609e-32
Identity = 57/70 (81.43%), Postives = 60/70 (85.71%), Query Frame = 2

Query:  476 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DP AFAELKV
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKV 70

HSP 2 Score: 45.8246 bits (107), Expect = 1.609e-32
Identity = 27/51 (52.94%), Postives = 31/51 (60.78%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXETXPT-LG*PCQIHAWA-THPLCPGK 836
            +NG++AM  MFGFF QAIVTGKGP E     L  P   +AWA      PGK
Sbjct:   74 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.628e-21
Identity = 81/236 (34.32%), Postives = 111/236 (47.03%), Query Frame = 2

Query:   53 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKVXKSEWKGGYXSHVWFLSSGHCHRQ 754
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+   E K G  + + F+  G C +Q
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTME---KDPEKKKYPGGAFDPLGFSKDPAKFEELKL--KEIKNGRLAMLAFV--GFCVQQ 209

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.748e-21
Identity = 45/65 (69.23%), Postives = 49/65 (75.38%), Query Frame = 2

Query:  497 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPGAFAELKV 682
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP  F ELKV
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKV 68

HSP 2 Score: 37.3502 bits (85), Expect = 7.748e-21
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM  M GF+ QAIVTG+GP E
Sbjct:   72 KNGRLAMSGMLGFYAQAIVTGEGPVE 97

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.954e-20
Identity = 61/167 (36.53%), Postives = 84/167 (50.30%), Query Frame = 2

Query:  203 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPGAFAELK 679
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELR 219

HSP 2 Score: 26.1794 bits (56), Expect = 7.954e-20
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM  + G + Q I TG GP +
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPID 249

[Close]

BLAST of EY693082 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.276e-19
Identity = 64/180 (35.56%), Postives = 87/180 (48.33%), Query Frame = 2

Query:  164 GSKSVSSGSPWYGPDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPGAFAELK 679
            GS+SV+  +    PDR  +   F G  PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+
Sbjct:   50 GSRSVAVSAVAADPDRPLW---FPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELR 219

HSP 2 Score: 26.1794 bits (56), Expect = 2.276e-19
Identity = 11/26 (42.31%), Postives = 17/26 (65.38%), Query Frame = 3

Query:  690 QNGKVAMXLMFGFFRQAIVTGKGPXE 767
            +NG++AM  + G + Q I TG GP +
Sbjct:  224 KNGRLAMLAVMGAWFQHIYTGTGPID 249

The following BLAST results are available for this feature:

BLAST of EY693082 vs. ExPASy Swiss-Prot

BLAST of EY693082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76


Match Name	E-value	Identity	Description
CB2C_SOLLC	1.031e-34	93.55	Chlorophyll a-b binding protein 1C, chloroplastic ...	[more]
CB2A_SOLLC	1.031e-34	93.55	Chlorophyll a-b binding protein 1A, chloroplastic ...	[more]
CB2F_SOLLC	1.749e-34	93.55	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]
CB2E_SOLLC	1.749e-34	93.55	Chlorophyll a-b binding protein 3A, chloroplastic ...	[more]
CB2D_SOLLC	2.369e-34	93.55	Chlorophyll a-b binding protein 1D (Fragment) OS=S...	[more]
CB21_RAPSA	1.609e-32	81.43	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB121_HORVU	1.628e-21	34.32	Chlorophyll a-b binding protein 1B-21, chloroplast...	[more]
CB21_EUGGR	7.748e-21	69.23	Chlorophyll a-b binding protein of LHCII type 1 (F...	[more]
CB12_SOLLC	7.954e-20	36.53	Chlorophyll a-b binding protein 7, chloroplastic O...	[more]
CB12_PETHY	2.276e-19	35.56	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-700-007-E12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY693082 ID=EY693082; Name=EY693082; organism=Citrus sinensis; type=EST; length=907bp
CCACGCGTCCGCGAGAACACTAGAGCTCACCAACAACTCCGATCATTGTA
AAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGCT
GTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTC
CATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACG
GCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAGC
TACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGCT
TTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCC
ACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTC
TTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGG
GGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGCC
TGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTG
ATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGT
GACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTG
ATGACCCCGGAGCTTTTGCTGAGCTCAAGGTAANGAAATCAGAATGGAAA
GGTGGCTATGNNTCTCATGTTTGGTTTCTTTCGTCAGGCCATTGTCACCG
GCAAGGGACCGNTAGAGACTTGNCCGACACTTGGCTGACCCTGTCAAATA
CATGCCTGGGCTACGCACCCACTTTGTCCCGGAAAGTGAGCTCGGNTGAT
AGAAGTTTTCTCTTTCNGNTTCTGAATTCATGNAATCTGTGGGAGCCNTG
GAGCTTT