EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.888e-67
Identity = 122/180 (67.78%), Postives = 144/180 (80.00%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSM+SSA V T+      QA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGR  CMKVWPP G KK ETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+V REH  +PGYYDGRYWTMWKLP++GCTD+ Q LK+V E   EYP++ +RII  DN RQVQ ++FIA +PP
Sbjct:    1 MASSMLSSAAVVTSQL----QATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.888e-67
Identity = 122/181 (67.40%), Postives = 149/181 (82.32%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA VAT  RA+  QASMV PFTGLKS+++FP ++K N DITSIASNGGR +CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+V RE++KSPGYYDGRYWTMWKLPM+GCTDATQ L +V EA   YP +++RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.888e-67
Identity = 122/180 (67.78%), Postives = 145/180 (80.56%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSM+SSA V T    S  QA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGR  CMKVWPP G KK ETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+V REH  +PGYYDGRYWTMWKLP++GCTD+ Q LK+V E   EYP++F+RII  DN RQVQ ++FIA +PP
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.888e-67
Identity = 123/182 (67.58%), Postives = 150/182 (82.42%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA  AT  R+++ QASMVAPFTGLKS+++FP TKK NN DITS+ASNGGR +CM+VWPP  +KK ETLSYLP LSDE LL EI YL+++GW+PCLEFE E+G+V RE++ SPGYYDGRYWTMWKLPM+GCTDATQ L +V EA   YP ++VRII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.466e-67
Identity = 125/180 (69.44%), Postives = 142/180 (78.89%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSMISS  V T NRA  G   MVAPFTGLKS +  P T+KTNNDITSIASNGGR QCM+VWPP G KK ETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+V REH++S GYYDGRYWTMWKLPM+GCTDA+Q LK++ EA   YP+ F+RII  DN RQVQ ++FIA +PP
Sbjct:    1 MASSMISSPAVTTVNRAGAG---MVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.466e-67
Identity = 122/180 (67.78%), Postives = 144/180 (80.00%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSM+SSA V T    S  QA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGR  CMKVWPP G KK ETLSYLP L++  L KE++YL+R+ WIPC+EFELE G+V REH  +PGYYDGRYWTMWKLP++GCTD+ Q LK+V E   EYP++F+RII  DN RQVQ ++FIA +PP
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.221e-67
Identity = 122/181 (67.40%), Postives = 149/181 (82.32%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA VAT  R +  QASMVAPFTGLKS+++FP ++K N DITSIASNGGR +CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+V RE++KSPGYYDGRYWTMWKLPM+GCTDATQ L +V EA   YP +++RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.221e-67
Identity = 122/181 (67.40%), Postives = 149/181 (82.32%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASS++SSA VAT  R +  QASMVAPFTGLKS+++FP ++K N DITSIASNGGR +CM+VWPP  +KK ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+V RE++KSPGYYDGRYWTMWKLPM+GCTDATQ L +V EA   YP +++RII  DN RQVQ ++FIA +P G
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.207e-67
Identity = 124/180 (68.89%), Postives = 142/180 (78.89%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            MASSMISS  V T NRA  G    VAPFTGLKS + FP T+KTNNDI SIASNGGR QCM+VWP TG KK ETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+V RE+H+SPGYYDGRYWTMWKLP++GCTDA+Q LK++ EA   YP+ F+RII  DN RQVQ ++FIA +PP
Sbjct:    1 MASSMISSPAVTTVNRAGAGT---VAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.495e-67
Identity = 114/179 (63.69%), Postives = 149/179 (83.24%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS++SSA VA+ N AS  QASMVAPFTGLKSS+ FP T+K N DIT++ASN G+ QCMKVWPP GL+K ETLSYLP +S+E L KE +YL+R+GW+PC+EF++  G+V RE+H+SPG+YDGRYWTMWKLPM+GCTD++Q ++++ EA  EYP +F+R+I  DN RQVQ ++FIA +P
Sbjct:    1 MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_RAPSA1.888e-6767.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSB_SOLTU1.888e-6767.40Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS2_BRANA1.888e-6767.78Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_SOLLC1.888e-6767.58Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_SOYBN2.466e-6769.44Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_BRANA2.466e-6767.78Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU3.221e-6767.40Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU3.221e-6767.40Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_GLYTO4.207e-6768.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA5.495e-6763.69Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
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