EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.333e-64
Identity = 114/179 (63.69%), Postives = 141/179 (78.77%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS++S+A    A   +  QA+MVAPF GLKS SAFP T+K NNDITS+ASNGGR QCM+VWPP G KK ETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+V REH  +PGYYDGRYWTMWKLPM+GCTD +Q + ++ EA   YP +F+RII  DN RQVQ ++FIA +P
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.267e-63
Identity = 111/174 (63.79%), Postives = 141/174 (81.03%), Query Frame = 2
Query:   59 SATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            S++VAT +R +  QA+MVAPFTGLKS++AFP TKK N D +++ SNGGR QCMKVWPP GLKK ETLSYLPPL++  L KE++YL+R  W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ + FIA++P G
Sbjct:    5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.654e-63
Identity = 116/179 (64.80%), Postives = 141/179 (78.77%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS++S+A    A   +  QA+MVAPF GLKS SAFP T+K NNDITS+ASNGGR QCM VWPP G+KK ETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+V REH  +PGYYDGRYWTMWKLPM+GCTD +Q + ++ EA   YP +F+RII  DN RQVQ V+FIA +P
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.161e-63
Identity = 112/174 (64.37%), Postives = 143/174 (82.18%), Query Frame = 2
Query:   59 SATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            S+TVAT +RA+  QA+MVAPFTGLKS++AFPATKK N D +++ SNGGR QCMKVWPP G KK ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.686e-63
Identity = 116/179 (64.80%), Postives = 141/179 (78.77%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS    ++VATA RA+  QASMVAPF GLKS+SAFP T+K    ++++ SNGGR QCMKVWP  GLKK ETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA Q +K+  E   EYP +F+R+I  DN RQVQ V+FI  +P
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.813e-63
Identity = 115/177 (64.97%), Postives = 144/177 (81.36%), Query Frame = 2
Query:   44 SSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            +S++S+A V TA+ A+  QA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGR  CM+VWPP  LKK ETLSYLP LS+E+LLKEINYL+  GW+PCLEFE+    V RE++KSPGYYDGRYWTMWKLPM+GCTDA+Q   +V E  N YP + VRII  DNKRQVQ ++FIA +P
Sbjct:    2 ASLMSNAAVVTASTAA--QANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.287e-63
Identity = 116/179 (64.80%), Postives = 141/179 (78.77%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASSM++S   A   RA   Q+SMVAPF GL+SS AFPAT+K NND++++ SNGGR  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE+H SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.287e-63
Identity = 116/177 (65.54%), Postives = 140/177 (79.10%), Query Frame = 2
Query:   44 SSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            +SM+S+A V    R +  QASMVAPFTGLKS SAFP TKK+N DITSIASNGGR QCM+VWPP G KK ETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+V REH  +PGYYDGRYWTMWKLPM+GCTD +Q + ++ EA   YP +F RII  DN RQVQ ++FIA +P
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.072e-62
Identity = 111/174 (63.79%), Postives = 142/174 (81.61%), Query Frame = 2
Query:   59 SATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            S+TVAT +RA+  QA+MVAPFTGLKS+ AFPATKK N D +++ SNGGR QCMKVWPP G K+ ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.389e-62
Identity = 115/179 (64.25%), Postives = 140/179 (78.21%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS    ++VATA   +  QASMVAPF GLKS+SAFP T+KT   ++++ SNGGR QCMKVWP  GLKK ETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA Q +K+  E   EYP +F+R+I  DN RQVQ V+FI  +P
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS3_MESCR3.333e-6463.69Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_HELAN1.267e-6363.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_MESCR1.654e-6364.80Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR2.161e-6364.37Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FRIAG3.686e-6364.80Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_SILPR4.813e-6364.97Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_LEMGI6.287e-6364.80Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_MESCR6.287e-6365.54Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_FLAPR1.072e-6263.79Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_FRIAG2.389e-6264.25Ribulose bisphosphate carboxylase small chain 2, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
back to top