EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 4.075e-62
Identity = 115/179 (64.25%), Postives = 140/179 (78.21%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASS    ++VATA  A+  QASMVAPF GLKS+SAFP T+KT   ++++ SNGGR QCMKVWP  GLKK ETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A Q +K+  E   EYP +F+R+I  DN RQVQ V+FI  +P
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.322e-62
Identity = 114/179 (63.69%), Postives = 139/179 (77.65%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASSM++S   A   R    Q +MVAPF GL+SS AFPAT+K NND++++ SNGGR  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE+H SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.951e-62
Identity = 114/179 (63.69%), Postives = 140/179 (78.21%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MA+S    ++VATA  A+  QASMVAPF GLKS+SAFP T+K    ++++ SNGGR QCMKVWP  GLKK ETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA Q +K+  E   EYP +F+R+I  DN RQVQ V+FI  +P
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 5.884e-61
Identity = 112/179 (62.57%), Postives = 140/179 (78.21%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASSM++S   A   RA   Q++MVAPF GL+SS AFPAT+K N +++++ SNGG+  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE+H SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.920e-60
Identity = 106/168 (63.10%), Postives = 137/168 (81.55%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A  A++ QA+MVAPFTGLKS++AFP TKK N D +++ASNGGR QCMKVWPP G K+ ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 6.506e-60
Identity = 105/168 (62.50%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A  A++ QA+MVAPFTGLKS++AFP TKK N D +++ SNGGR QCMKVWPP G K+ ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.110e-59
Identity = 105/168 (62.50%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A  A++ QA+MVAPFTGLKS++AFP TKK N D +++ SNGGR QCMKVWPP G K+ ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.110e-59
Identity = 105/168 (62.50%), Postives = 136/168 (80.95%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A  A++ QA+MVAPFTGLK+++AFP TKK N D +++ SNGGR QCMKVWPP G KK ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P G
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.449e-59
Identity = 112/179 (62.57%), Postives = 137/179 (76.54%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASSM++S   A A RA   Q +MV PF   +SS  FPAT+K NND++++ SNGGR  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE+H SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.507e-59
Identity = 111/179 (62.01%), Postives = 137/179 (76.54%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            MASSM++S   A A RA   Q+SMV PF   +SS  FPAT+K NN+++++  NGGR  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE+H SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS5_FRIAG4.075e-6264.25Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_LEMGI5.322e-6263.69Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS1_FRIAG6.951e-6263.69Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS2_LEMGI5.884e-6162.57Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS7_FLAPR2.920e-6063.10Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS3_FLAPR6.506e-6062.50Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_FLAPR1.110e-5962.50Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FLAPR1.110e-5962.50Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS4_LEMGI1.449e-5962.57Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI5.507e-5962.01Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
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