EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.602e-58
Identity = 104/168 (61.90%), Postives = 133/168 (79.17%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGR QCMKVWPP G KK ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+  SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ V+FIA++P G
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.602e-58
Identity = 103/166 (62.05%), Postives = 134/166 (80.72%), Query Frame = 2
Query:   77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            A  A++ QA+MVAPFTGLK+++AFP TKK N D +++ SNGGR QCMKVWPP G KK  TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+V RE+ +SPGYYDGRYWTMWKLPM+GCTD+ Q +K++ E   EYP +++RII  DN RQVQ ++FIA++P
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 7.953e-58
Identity = 107/175 (61.14%), Postives = 134/175 (76.57%), Query Frame = 2
Query:   50 MISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            M+S+A VA    A   Q +MV  F G +SS AFPAT+K NND++++ S+GGR  CM+VWPP GLKK ETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+V RE++ SPGYYDGRYWTMWKLPM+GCTDA+Q + +V EA   YP  FVRII  DNKRQVQ ++FIA +P
Sbjct:    2 MVSTAAVARVRPA---QTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 9.721e-56
Identity = 102/160 (63.75%), Postives = 127/160 (79.38%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P ++++N    S+ SNGGR +CM+VWP  G+KK ETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G++ REH+ SPGYYDGRYWTMWKLPM+GCTDATQ L +V E   EYP ++VRII  DN RQVQ V+FIA +PPG
Sbjct:   10 ATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.694e-55
Identity = 101/160 (63.12%), Postives = 125/160 (78.12%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P + ++ +   S  SNGGR +CM+VWP  G+KK ETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+V REH+ SPGYYDGRYWTMWKLPM+GCTDATQ L +V E   EYP ++VR+I  DN RQVQ V+FIA +PPG
Sbjct:   10 ATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 100/160 (62.50%), Postives = 126/160 (78.75%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P ++++   + S+ SNGGR +CM+VWP  G+KK ETLSYLPPLS EAL K+++YLIRS W+PCLEF  + G+V REH+ SPGYYDGRYWTMWKLPM+GCTDATQ L +V E   EYP ++VR+I  DN RQVQ V+FIA +PPG
Sbjct:   10 ATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 100/160 (62.50%), Postives = 124/160 (77.50%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P  +++ N      SNGGR +CM+VWP  G+KK ETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+V RE+H+SPGYYDGRYWTMWKLPM+GCTDATQ LK++ EA   YP +FVRII  DN RQVQ ++FIA +PPG
Sbjct:   10 ATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 8.230e-55
Identity = 100/160 (62.50%), Postives = 124/160 (77.50%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P  +++ N      SNGGR +CM+VWP  G+KK ETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+V RE+H+SPGYYDGRYWTMWKLPM+GCTDATQ LK++ EA   YP +FVRII  DN RQVQ ++FIA +PPG
Sbjct:   10 ATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 1.075e-54
Identity = 100/160 (62.50%), Postives = 125/160 (78.12%), Query Frame = 2
Query:  101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            A+ VAPF GLKS++  P ++++ N      SNGGR +CM+VWP  G+KK ETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+V RE+H+SPGYYDGRYWTMWKLPM+GCTDATQ LK++ EA   YP +FVRII  DN RQVQ ++FIA +PPG
Sbjct:   10 ATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.833e-54
Identity = 106/181 (58.56%), Postives = 133/181 (73.48%), Query Frame = 2
Query:   38 MASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580
            MASSM+ S   A  +R S  Q++MV PF GL SS+AFP T+K   D + + SNG R +CM+VWPP G KK ETLSYLPPL+ E L +E++YLIR+GWIPC+EF  + G+V RE+H SPGYYDGRYWTMWKLPM+GCTD++Q LK+V E    YP  F RII  DN RQVQ ++F+  +P G
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS_FLATR1.602e-5861.90Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_FLAPR1.602e-5862.05Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_LEMGI7.953e-5861.14Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_HORVU9.721e-5663.75Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT3.694e-5563.13Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT8.230e-5562.50Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ8.230e-5562.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI8.230e-5562.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ1.075e-5462.50Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_ZANAE1.833e-5458.56Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
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