EY693017
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 4.516e-53 Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 2 Query: 101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A+ VAPF GLKS++ P ++++N SNGGR +CM+VWP G+KK ETLSYLPPLS E LLK+++YLIRS W+PCLEF + G++ REH+ SPGYYDGRYWTMWKLPM+GC TQ + +V E EYP + RII DN RQVQSV+FIA++PPG Sbjct: 10 ATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 2.319e-49 Identity = 92/160 (57.50%), Postives = 122/160 (76.25%), Query Frame = 2 Query: 101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A+ VAPF GLKS+++ P ++++ + ++ SNGGR +CM+VWP G KK ETLSYLPPLS + LLK+++YL+R+GWIPCLEF + G+V RE+ SP YYDGRYWTMWKLPM+GC DATQ K++ EA YP +F R+I DN +Q Q V+FIA +PPG Sbjct: 11 ATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 3.956e-49 Identity = 90/170 (52.94%), Postives = 124/170 (72.94%), Query Frame = 2 Query: 77 ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574 A A G A++V+ FTGLKS++ FP++ K +N SNGGR +CM+VWPP G K ETLSYLP L++E L+KE+ YL+R+ W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+Q + +V E YP +F+R+I DN RQVQ ++FI +P Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.662e-47 Identity = 93/187 (49.73%), Postives = 128/187 (68.45%), Query Frame = 2 Query: 38 MASSMIS----SATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574 MASS+++ +A A A + G +++V+ FTGLKS + FP++K +N SNG R +CM+VWPP KK ETLSYLP L+ E L+KE+ YL+++ W+PCLEFE E G + R + SPGYYDGRYW MWKLPM+GCT+A+Q L +V E YP++F+R+I DN RQVQ ++FI +P Sbjct: 1 MASSIMALSSTAAVAAVAAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.120e-46 Identity = 84/132 (63.64%), Postives = 101/132 (76.52%), Query Frame = 2 Query: 179 TSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574 T I SNG R +CM+VWPP G KK ETLSYLPPL+ + LLKE+ YL+R GW+PCLEFEL KG+V EH+KSP YYDGRYWTMWKLPM+G TD Q +K+V E YP +FVR+I +N RQVQ ++FIA P Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.526e-45 Identity = 88/160 (55.00%), Postives = 115/160 (71.88%), Query Frame = 2 Query: 101 ASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A+ APF GLKS+++ P +++ + + SNGGR +CM+VWP G KK ETLSYLPPL+ E LLK+++YL+R+ W+PCLEF E G+V RE+ SP YYDGRYWTMWKLPM+GCTDA+Q K++ EA YP I+ DN RQ Q +TFIA +P G Sbjct: 10 ATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 3.357e-40 Identity = 76/122 (62.30%), Postives = 93/122 (76.23%), Query Frame = 2 Query: 215 MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 M+VWPP GLKK ETLSYLPPL+ E LL E+NYL+ GWIP LEFE++ G+V REH KSPGYYDGRYWTMWKLPM+G TD Q + +V E P +FVR I ++KR+VQ ++FIA +P G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.406e-38 Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 2 Query: 260 SYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 +YLPPLS EALLK+++YLIRS W+PCLEF + G++ REH+ SPGYYDGRYWTMWKLPM+GCTDATQ + +V E EYP ++VRII DN RQVQ V+FIA +PPG Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.194e-37 Identity = 81/181 (44.75%), Postives = 111/181 (61.33%), Query Frame = 2 Query: 44 SSMISSATVAT---ANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEY-PHSFVRIIASDNKRQVQSVTFIAAQP 574 +S+++SA V T A+ AS ++S + + F + T +NG R CM+VW P K ETLSYLPPLS +AL K+I+Y+I+SGW PC+EF+++ G V RE PGYYDGRYWTMWKLPM+GCTD+ L+++ E Y ++R + DN RQVQ +FI QP Sbjct: 2 ASVVASAAVVTPFAASAASTTKSSQIVSVQAGLKAGVFGGKSEWQ---TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.372e-30 Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 2 Query: 188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A G +D MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 272 AMTGEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 2 Score: 131.724 bits (330), Expect = 5.372e-30 Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 2 Query: 188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A G +D MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 559 AMTGEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 3 Score: 131.724 bits (330), Expect = 5.372e-30 Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 2 Query: 188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A G +D MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 702 AMTGEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 4 Score: 131.724 bits (330), Expect = 5.372e-30 Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 2 Query: 188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A G +D MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 990 AMTGEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 5 Score: 130.954 bits (328), Expect = 9.162e-30 Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 2 Query: 215 MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 6 Score: 129.798 bits (325), Expect = 2.041e-29 Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 2 Query: 188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 A G +D MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD YWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P G Sbjct: 415 AMTGEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 129.028 bits (323), Expect = 3.482e-29 Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 2 Query: 215 MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574 MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR+ A D+ +QVQ ++F+ +P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 126.716 bits (317), Expect = 1.728e-28 Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 2 Query: 215 MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPPG 580 MKVW P KK ET SYLPPLSD + K+++ +I G PCLEF E ++ ++ + GYYD RYWTMWKLPM+GCTDA+Q L+++ E YP +VR +A D+ +QVQ ++F+ +P G Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980 The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bpback to top |