EY693017

Overview
NameEY693017
Unique NameEY693017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 7.015e-30
Identity = 75/188 (39.89%), Postives = 104/188 (55.32%), Query Frame = 2
Query:   29 AEPMASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            A  +A S +S+A    A        S V P   LK     PA K        +A+    +Q M VW P   K  ET SYLPPLSDE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  Q L+++      +P ++VR++A DN++QVQ + F+  +P
Sbjct:    2 AAVIAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAA-----PVAAPAQANQMM-VWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.197e-29
Identity = 74/188 (39.36%), Postives = 104/188 (55.32%), Query Frame = 2
Query:   29 AEPMASSMISSATVATANRASLGQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEF-ELEKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            A  +A S +S+A    A        S V P   LK     PA K        +A+    +Q M VW P   K  ET SYLPPL+DE +  +++Y++ +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  Q L+++      +P ++VR++A DN++QVQ + F+  +P
Sbjct:    2 AAVIAKSSVSAAVARPAR-------SSVRPMAALK-----PAVKAA-----PVAAPAQANQMM-VWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.947e-28
Identity = 56/129 (43.41%), Postives = 82/129 (63.57%), Query Frame = 2
Query:  206 DQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFE------LEKGWVDREHHKSPGYYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQP 574
            D   KVW P   K+ ET SYLPPL+++ + ++++Y+I +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +Q L++V      +P+ ++R++A DN +QVQ + F+  +P
Sbjct:   26 DARFKVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.910e-27
Identity = 61/152 (40.13%), Postives = 86/152 (56.58%), Query Frame = 2
Query:  146 FPATKKTNNDITSIASNGGRDQC--MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            FP   K N      ASN    +C  M VW P   K  ET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L ++      +P +++R++  D  RQVQ   F+  +PP
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.260e-27
Identity = 58/152 (38.16%), Postives = 87/152 (57.24%), Query Frame = 2
Query:  140 SAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            +A P    +     S  +N  R+  M VW P   K  ET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L ++    N +P +++R++  D  RQVQ   F+  +PP
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.482e-27
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 2
Query:  125 GLKSSSAFPATKKTNNDITSIASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            G    SA P          + A N  R+  M VW P   K  ET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L ++      +P +++R++  D  RQVQ   F+  +PP
Sbjct:   15 GCTKPSAVPKVSINRKGFLNTAMNKKRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.238e-26
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 2
Query:  203 RDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            +D+ M VW P   K  ET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L D+      +P +++R++  D  RQVQ   F+  +PP
Sbjct:   40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.112e-26
Identity = 62/171 (36.26%), Postives = 93/171 (54.39%), Query Frame = 2
Query:   86 ASLGQASMVAPFTGLKSSSAFPATKKTNNDITS-IASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            A++   ++V    G   SS+ P          S +A    R+  M VW P   K  ET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L ++      +P +++R++  D  RQVQ   F+  +PP
Sbjct:    3 AAMMNKTIVVSKDGCARSSSIPKVATNKMGFASAVAMKKSRE--MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.759e-26
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  188 ASNGGRDQCMKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            A N  RD  M VW P   K  ET S+LPPL+DE + K+++Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +Q L ++    N +P +++R++  D  RQVQ   F+  +PP
Sbjct:   37 AVNKNRD--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of EY693017 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.048e-25
Identity = 53/127 (41.73%), Postives = 78/127 (61.42%), Query Frame = 2
Query:  215 MKVWPPTGLKKIETLSYLPPLSDEALLKEINYLIRSGWIPCLEFEL-EKGWVDREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQGLKDVGEAHNEYPHSFVRIIASDNKRQVQSVTFIAAQPP 577
            M VW P   K  ET SYLPPL+DE + K+++Y++ + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +Q L ++      +P +++R++  D  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
The following BLAST results are available for this feature:
BLAST of EY693017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBS2_CHLRE7.015e-3039.89Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE1.197e-2939.36Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CHLMO2.947e-2843.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACECL1.910e-2740.13Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACEAT7.260e-2738.16Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS4_ACECL9.482e-2738.22Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL1.238e-2641.98Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_ACECL2.112e-2636.26Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS5_ACEAT2.759e-2641.91Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_ACECL1.048e-2541.73Ribulose bisphosphate carboxylase small chain 6, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-006-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY693017 ID=EY693017; Name=EY693017; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCGAAGGTAGAAGAAGGAGCAGAACCAATGGCTTCCTCAA
TGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGGTCAG
GCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCC
AGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCG
GAAGAGACCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGATC
GAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGA
AATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGT
TGGAGAAAGGATGGGTGGACCGTGAGCACCACAAGTCACCAGGATACTAC
GATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGA
TGCAACCCAAGGTTTGAAGGACGTTGGGGAGGCCCACAATGAATACCCAC
ATTCATTCGTCCGAATTATCGCATCTGACAACAAGCGTCAAGTGCAGAGC
GTCACCTTCATTGCTGCTCAGCCACCAGGCGTCTAGGTTCCCTATTAGAT
CTGTGCTACCACCCACGCACATTGNTGGATATTATTATGTGAACCGCCAT
AATGNATCATCGATCAATGGGGGAGTCTGGTAGCGTTCATTTTCACTTAN
GCTGCTGGAGCTGCAGCTCAAACTTATGTGGTATCTGCGCGACTATGGCT
CTCTCTTATTATTAAATGAATTAAAAATCTGATCCCTGTGATTACTGTCA
TTAAACCGGGCCGCGGAGGTCCATTTATGAGCGGGATTACTGCAATAAAG
GAGACCTTATATTTCTGGCAACAGCTGAAAAAGAGC
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