EY692910

Overview
NameEY692910
Unique NameEY692910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length948
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 8.104e-96
Identity = 177/246 (71.95%), Postives = 197/246 (80.08%), Query Frame = 3
Query:   90 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-XPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG  PLGE  D LYPGGSFDPLGLA DPEAFAEL V E++     + S    F    ++    +  L   L DP +NNA A
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWA 258          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 1.058e-95
Identity = 181/240 (75.42%), Postives = 193/240 (80.42%), Query Frame = 3
Query:  114 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAG PLGEV DPLYPGG+FDPLGLADDPEAFAEL V EI+     + S    F    ++    +  L   L DP +NNA A
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 256          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.382e-95
Identity = 176/247 (71.26%), Postives = 198/247 (80.16%), Query Frame = 3
Query:  108 NLAPSGNELSNGG------RISMRK-TGSKSVSSG--SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            ++ P  N+L   G      R++MRK TG KSV++   SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLG+P LIHAQSILAIWACQV+LMGA+EGYR+AG PLGEVTDP+YPGG+FDPLGLADDP+AFA++ V EI+     + S    F    ++    +  L   L DP +NNA A
Sbjct:   23 SVKPQNNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWA 269          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.805e-95
Identity = 177/228 (77.63%), Postives = 188/228 (82.46%), Query Frame = 3
Query:  144 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            GRI+MRK+ +K    +SGSPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QVVLMGAVEGYRIAG PLGEV DPLYPGGSFDPLGLADDPEAFAEL V EI+     + S    F    ++    +  L   L DP +NNA A
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 252          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.294e-93
Identity = 182/251 (72.51%), Postives = 196/251 (78.09%), Query Frame = 3
Query:   96 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA-TPPLCPRK 842
            G+A+ LAPS  EL  G R+SMRKT  K+VSSGSPWYGPDRVKYLGPFSGE PSYLTGEF G        LSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWA QV+LMGAVEGYRIAG PLGEVTDP+YPGGSFDPLGLADDPEA AEL V E++     + S    F    ++    +  L   L DP +NNA A    LCP K
Sbjct:   15 GQAMKLAPSTPELGVG-RVSMRKTAPKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 333.954 bits (855), Expect = 7.849e-91
Identity = 165/231 (71.43%), Postives = 184/231 (79.65%), Query Frame = 3
Query:  147 RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGATPPLCP 836
            R++MR+T SKS  S + WYG DR K+LGPFSGE PSYL GEF GDYGWDTAGLS+DPETFA+NRELEVIH RWAMLGALGC+ PELLA++GVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWACQVVLMGAVEGYR+AG PLGEVTDP+YPGGSFDPLGLADDP+ FAEL V EI+     + S    F    ++    +  L   L DP  NNA A  P  P
Sbjct:   35 RVTMRRTVSKSAGSDTIWYGADRPKFLGPFSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSP 265          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.339e-90
Identity = 165/217 (76.04%), Postives = 178/217 (82.03%), Query Frame = 3
Query:  165 TGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNA 812
            T  K  SS SPW+GPD VKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYRIAG PLGEV DPLYPGGSFDPLGLA+ PEAFAEL V E++     + S    F    ++    +  L   L DP +NNA
Sbjct:    1 TTKKVASSSSPWHGPDGVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNA 217          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 332.798 bits (852), Expect = 1.749e-90
Identity = 164/227 (72.25%), Postives = 183/227 (80.62%), Query Frame = 3
Query:  141 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            GGR+SMR+T   + +S   WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMG VEGYR+ G PLGE  DP+YPGG+FDPLGLADDP+AFAEL V EI+     + S    F    ++    +  L   L DP  NNA A
Sbjct:   32 GGRVSMRRTVKSAPTS--IWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWA 256          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 329.331 bits (843), Expect = 1.933e-89
Identity = 168/237 (70.89%), Postives = 184/237 (77.64%), Query Frame = 3
Query:  126 NELSNG-----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            NELS        R+ M    SK+  SGS WYG DR  YLGPFSG PPSYL+GEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCV PELLA+NGVKFGEAVWFKAG+QIF+EGGLDYLGNPSL+HAQSILAIWACQV+LMGAVEGYR+AG PLGEV DP+YPGGSFDPLGLADDPEAFAEL V E++     + S    F    ++    +  L   L DP  NNA A
Sbjct:   21 NELSRKVGAGEARVQMMAPKSKA-PSGSIWYGSDRPLYLGPFSGSPPSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWA 256          
BLAST of EY692910 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 6.219e-88
Identity = 163/228 (71.49%), Postives = 176/228 (77.19%), Query Frame = 3
Query:  144 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGXPLGEVTDPLYPGGSFDPLGLADDPEAFAELXVXEIRM-EXWLXSPCXXFSXRXMSPXRTVRELLATLXDPCHNNAGA 818
            GRI+MRKT +K     SGSPWYG DRV YLGP SG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVLMGAVEGY +AG  LGEV DPLY GGSFDPLGL DDPE FAEL V EI+     + S    F    ++    +  L   L DP +NNA A
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWA 255          
The following BLAST results are available for this feature:
BLAST of EY692910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB22_ARATH8.104e-9671.95Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ1.058e-9575.42Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_PYRPY1.382e-9571.26Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB22_ORYSJ1.805e-9577.63Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_SOYBN1.294e-9372.51Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_PHYPA7.849e-9171.43Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.339e-9076.04Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_GOSHI1.749e-9072.25Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_POLMU1.933e-8970.89Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB48_MAIZE6.219e-8871.49Chlorophyll a-b binding protein 48, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-005-G04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692910 ID=EY692910; Name=EY692910; organism=Citrus sinensis; type=EST; length=948bp
CCACGCGTCCGGCTTCTCTTGCTTGCACAACTTCTGCTTCTCCATTAAAT
TCCGCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTCGGCAA
GGCTGTGAACCTTGCCCCTTCAGGCAATGAGCTAAGCAATGGTGGCCGCA
TCTCCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGG
TACGGCCCGGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAGCCCCC
AAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACACAGCCG
GGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTC
ATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGA
GCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGG
CGGGAGCTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCA
AGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGT
CTTGATGGGAGCCGTTGAGGGTTACAGAATTGCTGGANGGCCGCTCGGTG
AAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTG
GCTGATGACCCGGAGGCTTTTGCTGAGCTCANGGTTAANGAAATCAGAAT
GGAANGTTGGCTATGNTCTCCATGTTNGGNNTTCTCGNTCAGGNCCATGT
CACCNNGCAGGACCGTTAGAGAACTTTTGGCGACACTGGNCGACCCCTGT
CACAACAATGCTGGGGCTACGCCACCACTTTGTCCCCGGAAATGAGCTCG
GNTGATACATANTAGCGTGAAATGGAATNGAGNAGGATGNTTATGATGGA
CTCATTCACTTGCAAACTGGGAATATGTATGACTGCTACTACAGTTGA
back to top