EY692789

Overview
NameEY692789
Unique NameEY692789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.845e-34
Identity = 77/187 (41.18%), Postives = 121/187 (64.71%), Query Frame = 3
Query:   75 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            K +  +E + +P+GV+V I+   + V+GP+G+L+RDF H       + ++E GK K+ ++A+F +R+  A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NFLGEK  R   ++ GVTV    KV KD+++++G DIE V ++AA I     VK+KD    +DGIY+ EK
Sbjct:    3 KAVYVAEEVRVPEGVEVSIDGLKVTVKGPKGELTRDFSHARNIVIRLDEDEEGK-KVVVEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_IGNH4 (50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.541e-32
Identity = 70/184 (38.04%), Postives = 115/184 (62.50%), Query Frame = 3
Query:   75 KTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKD-ELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYV 623
            K +     +D+P+GV+V++    ++V GP+G+L RDF H      +   EE GK+++ ++ +F +RK  A + T  +H+ N+ITGVTKG+RYKM+ V++HFPI+  +  +   +EI NF+GEK  R   +L GVTV    KV+  +++++G DIE V+++AA I     +   D    +DGIY+
Sbjct:    3 KAVWVHALVDVPEGVEVEVEGSKVKVRGPKGELERDFSHAK-GIRIRVVEEEGKKQVLVETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTV----KVQGRDVIIEGTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_STAMF (50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.700e-29
Identity = 67/182 (36.81%), Postives = 108/182 (59.34%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-----DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYV 623
            E +DIP+ V V+IN   ++V GP+G + RDF H+    +++  +E  K  + ++ +F  R+  A + T  SH+ N+I GV KGYRYK++ +Y+HFPI   + + N+ + I+NFLGEK        D +  I  + VK     ++++++G DIE V ++AA I     VK+KD     DGIY+
Sbjct:    9 EEIDIPENVTVEINGLKVKVNGPKGSIERDFSHVR---NIILRKENSK--IIVETFFADRRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKS-------DRIAKIIGEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_DESK1 (50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.047e-28
Identity = 66/185 (35.68%), Postives = 108/185 (58.38%), Query Frame = 3
Query:   90 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKSTIL 644
            +E ++IP+ V V+++   + V+GP+G ++RDF H    F  + D     R + ++ +   RK  A + T  +H+ N+ITGV +GYRYK++ +++HFPI  S+   NK + IRNF+GEK  R   +   V V  S    ++++++G DIE V  +AA I     V ++D    +DGIY+ EK   L
Sbjct:    8 AEKVEIPENVAVEVDGLRVTVKGPKGIITRDFSHARGVFIRLED-----RVVIVETFVADRKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSG---EDIIIEGVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEKGEAL 184          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_SULTO (50S ribosomal protein L6P OS=Sulfolobus tokodaii GN=rpl6p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.196e-28
Identity = 63/195 (32.31%), Postives = 112/195 (57.44%), Query Frame = 3
Query:   72 MKTILSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKSTILGEE 653
            MK +   E ++IP G+ V I    I+V+GP+G++ +DF H++    +  ++     K+ ++  F  R+  A   + ++H+ N+ TGVTKGYRY ++ +Y HFP+   +  N   ++I+N +GEK +R+  ++ GV V     VK ++++++G DIE V ++AA I     +   D     DGIY+ +K  I  E+
Sbjct:    1 MKAVHLYEEIEIPQGINVNIEGMKIKVKGPKGEIEKDFSHIS-GIEIRKEDN----KIVVETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV----NVKGEDIIVEGQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQ 184          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_AERPE (50S ribosomal protein L6P OS=Aeropyrum pernix GN=rpl6p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.414e-25
Identity = 65/184 (35.33%), Postives = 109/184 (59.24%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKSTI 641
            E +++P+GV V I+   ++V GP+G++ RDF H       + D       + ++++F   +  A +     H+ N+I GV  G+RYK++ +Y+HFPIN  +   +K I I NFLGEK +R   ++ GV V    +VK  +++++G D+E V+++AA I     VK+KD  K +DGIY+ E+  I
Sbjct:    9 ERVEVPEGVTVSIDGMRVKVSGPKGEVERDFSHARGVLIRLEDNS-----VVVESFFAKARQRALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPINVKV-EGDKFI-ISNFLGEKGLRIARIMPGVKV----QVKGSDVIVEGIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_PYRKO (50S ribosomal protein L6P OS=Pyrococcus kodakaraensis GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.172e-25
Identity = 66/182 (36.26%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKS 635
            E ++IP+GV+V +    ++V+GP+G+L R+ K+  +         T   K+ I   F  +K  A +RT  +H+ N+I GVT+G++Y+++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E+ ++G D E V ++AA I     +   D     DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVTVEGNTVKVKGPKGELQRELKYPGVQIF------TEDGKVVIYKEFPRKKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV----KVKGSEIEVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_THEON (50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 66/181 (36.46%), Postives = 102/181 (56.35%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKS 635
            E ++IP+GV+V I   V++V GP+G+L R+ K+  +         T   K+ I   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV     +  E++++G D E V ++AA I     +   D     DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTIERNVVKVRGPKGELERELKYPGVQIF------TEDGKVVIYKEFPRKKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTV---KVMGSEVIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_THEGJ (50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.485e-24
Identity = 66/182 (36.26%), Postives = 104/182 (57.14%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKS 635
            E ++IP+GV+V +   V++V+GP+G+L R+ K+  +         T   K+ +   F  +K  A  RT  +H+ N+I GVT+G+ YK++ VY+HFP+   +  +   IE  NFLGEK  R+  +L GVTV    KV+  E+ ++G D E V ++AA I     +   D     DGIY+ EK+
Sbjct:    9 EEVEIPEGVEVTVENNVVKVKGPKGELERELKYPGVKIF------TEDGKVVVYKEFPRKKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTV----KVRGQEITVEGIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_PYRAB (50S ribosomal protein L6P OS=Pyrococcus abyssi GN=rpl6p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.485e-24
Identity = 68/182 (37.36%), Postives = 105/182 (57.69%), Query Frame = 3
Query:   93 ETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKS 635
            E ++IP+GV+V +    ++V+GP+G++ R+     +   +    E GK  +  D  F  RK  A +RT  +H+ N+I GVT+G+ YK++ VY+HFPI   +  +   IE  NFLGEK  R+  +L GVTV    KVK  E++++G D E V ++AA I     +   D     DGIY+ EK+
Sbjct:    9 EEIEIPEGVEVSVQGNTVKVKGPKGEVERELFWPGVKIFV----EGGKVVIYKD--FPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTV----KVKGQEIIVEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178          
The following BLAST results are available for this feature:
BLAST of EY692789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_HYPBU2.845e-3441.1850S ribosomal protein L6P OS=Hyperthermus butylicu... [more]
RL6_IGNH44.541e-3238.0450S ribosomal protein L6P OS=Ignicoccus hospitalis... [more]
RL6_STAMF4.700e-2936.8150S ribosomal protein L6P OS=Staphylothermus marin... [more]
RL6_DESK11.047e-2835.6850S ribosomal protein L6P OS=Desulfurococcus kamch... [more]
RL6_SULTO5.196e-2832.3150S ribosomal protein L6P OS=Sulfolobus tokodaii G... [more]
RL6_AERPE2.414e-2535.3350S ribosomal protein L6P OS=Aeropyrum pernix GN=r... [more]
RL6_PYRKO9.172e-2536.2650S ribosomal protein L6P OS=Pyrococcus kodakaraen... [more]
RL6_THEON1.565e-2436.4650S ribosomal protein L6P OS=Thermococcus onnurine... [more]
RL6_THEGJ3.485e-2436.2650S ribosomal protein L6P OS=Thermococcus gammatol... [more]
RL6_PYRAB3.485e-2437.3650S ribosomal protein L6P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692789 ID=EY692789; Name=EY692789; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGGGCAGCTCTATCTTAAGCGTAGGAGGAGAAGAAGAAGGA
AGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTAT
GGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAG
TAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTC
GACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGAT
CGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCC
TCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTAC
AAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAA
CAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTC
GAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTT
AAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTC
TGCTGCTCTAATCAATCANAAATGCCATGTGAAGAACAAGGACATTANGA
AAGTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAA
GAATGATGATTAGCTCTCGAATTTTCTTGTCATAGTAATGTTATGAATTA
TTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTNGACGACATGCT
TTTGGTTGTATTTGGGGATTGGGACCTGGGGAGTCTANATTTCAATTTAT
GTCTTCAATTGCTTCATCACATATATGTATGGATTTATAGCTATGCATCT
GCATTTTTGATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCG
GCCCT
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