EY692789

Overview
NameEY692789
Unique NameEY692789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 61/185 (32.97%), Postives = 98/185 (52.97%), Query Frame = 3
Query:   90 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEKS 635
            + T++IP+GV V +   V    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R         +I   KVK   +++ + G + E V ++AA I  K  +K  D     DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 63/187 (33.69%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   84 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            ++   ++IP+ V  +++   + VEGP G ++R   + ++   +  DE+     + I+      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I     V +KD     DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.858e-18
Identity = 55/178 (30.90%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   99 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            ++IPD V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I     V +KD     DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.852e-17
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 3
Query:   99 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSE 629
            ++IPD V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I     V +KD     DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 58/178 (32.58%), Postives = 97/178 (54.49%), Query Frame = 3
Query:   99 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            ++IP+ V  + +   I VEG  G ++R   + ++D  +  D +T    + I++   + KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I     + +KD+    DG+Y++ K
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.127e-17
Identity = 54/182 (29.67%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  105 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINXKCHV--KNKDIXKVLDGIYVSEKS 635
            IP+ VKV     +++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   ++++  LD V V I  +K + E+V++  D E     A++I        K KD  +  DGI++  K+
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.039e-17
Identity = 59/198 (29.80%), Postives = 102/198 (51.52%), Query Frame = 3
Query:   72 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXK---------VLDGIYV 623
            M+ + S E ++IP GV V I        +++V+GP G+++++FK+  +   L         K+ ++ +   ++  A + T    + N+  GVT+G+RYK++ +Y HFP+   +  N   IE  NFLG K    +++  GV V    K K+++V++G D ELVS  AA +     +   +            V+DGIYV
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDG------KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAVQAATELHGDERPSPHGREGGLGVVDGIYV 188          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.048e-16
Identity = 55/189 (29.10%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   81 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            +     +++P+ V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF+GEK  R+  ++    V  S +   ++ + G DIE   ++AA +     +K KD     DGIY+ +K
Sbjct:   18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 52/191 (27.23%), Postives = 103/191 (53.93%), Query Frame = 3
Query:   81 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            I+  E + I D V+++I+ +      + V+GP+G+++++F + ++   +  DE      + I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R  +++D     VI   +   ++++ G D E V ++AA +    ++K++D     DGIY+ EK
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.734e-15
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 3
Query:   99 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            ++IP+G+ V  +   V    GP G + R   +  +  ++   E      +++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R   +L G T ++     +E+ + G + E V ++AA I  K  +K  D     DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVRDGE------VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
The following BLAST results are available for this feature:
BLAST of EY692789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_METAC1.675e-1832.9750S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_HALWD1.675e-1833.6950S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALSA2.858e-1830.9050S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_NATPD1.852e-1734.4650S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_HALMA3.160e-1732.5850S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_NANEQ4.127e-1729.6750S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_PYRAE7.039e-1729.8050S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]
RL6_ARCFU2.048e-1629.1050S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METKA5.959e-1627.2350S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_METBF1.734e-1531.2850S ribosomal protein L6P OS=Methanosarcina barker... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692789 ID=EY692789; Name=EY692789; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGGGCAGCTCTATCTTAAGCGTAGGAGGAGAAGAAGAAGGA
AGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTAT
GGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAG
TAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTC
GACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGAT
CGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCC
TCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTAC
AAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAA
CAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTC
GAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTT
AAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTC
TGCTGCTCTAATCAATCANAAATGCCATGTGAAGAACAAGGACATTANGA
AAGTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAA
GAATGATGATTAGCTCTCGAATTTTCTTGTCATAGTAATGTTATGAATTA
TTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTNGACGACATGCT
TTTGGTTGTATTTGGGGATTGGGACCTGGGGAGTCTANATTTCAATTTAT
GTCTTCAATTGCTTCATCACATATATGTATGGATTTATAGCTATGCATCT
GCATTTTTGATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCG
GCCCT
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