EY692789

Overview
NameEY692789
Unique NameEY692789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 3
Query:   90 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYVSEK 632
            + ++ IPDG KV I+   + +      +S++F   N    L+ D  T    +KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K + I NF GE+  R  +++   TV ++ D+V     + G   + V  +AA I     +K  D     DGIY+  K
Sbjct:    7 ARSIKIPDGFKVSISGTTVTISYGGKTISKNFA--NNYVKLVEDGST----IKINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176          
BLAST of EY692789 vs. ExPASy Swiss-Prot
Match: RL6_PICTO (50S ribosomal protein L6P OS=Picrophilus torridus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.343e-12
Identity = 49/174 (28.16%), Postives = 85/174 (48.85%), Query Frame = 3
Query:  105 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK-DELVLDGNDIELVSRSAALINXKCHVKNKDIXKVLDGIYV 623
            +PD V+  +    ++++G  G+ SR F+   +  ++          +KI     ++ T   + T  S    LI GVTKG+ Y M+  + HFP+  S+  +   +E  NFLGEK  R   ++DG  V     VK D + ++G D   +  +AA I    ++++ D     DGI++
Sbjct:   12 LPDDVQATMENNELKIKGKLGEASRIFRDNYVKAYIEGSS------VKIATSKNNKYTKGIVGTWYSETKLLIEGVTKGFEYHMKIDFTHFPMRVSVRGDKLIVE--NFLGEKSPRSAKIVDGCKV----SVKGDRITINGIDKRKIGETAANIERATYIRHFDARVFQDGIFL 173          
The following BLAST results are available for this feature:
BLAST of EY692789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_THEAC1.794e-1228.5750S ribosomal protein L6P OS=Thermoplasma acidophi... [more]
RL6_PICTO2.343e-1228.1650S ribosomal protein L6P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692789 ID=EY692789; Name=EY692789; organism=Citrus sinensis; type=EST; length=905bp
CCACGCGTCCGGGCAGCTCTATCTTAAGCGTAGGAGGAGAAGAAGAAGGA
AGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTAT
GGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAG
TAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTC
GACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGAT
CGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCC
TCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTAC
AAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAA
CAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTC
GAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTT
AAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTC
TGCTGCTCTAATCAATCANAAATGCCATGTGAAGAACAAGGACATTANGA
AAGTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAA
GAATGATGATTAGCTCTCGAATTTTCTTGTCATAGTAATGTTATGAATTA
TTTTTTAAATCTTTTTAATTTTGCCTCTTACTTTGAGTNGACGACATGCT
TTTGGTTGTATTTGGGGATTGGGACCTGGGGAGTCTANATTTCAATTTAT
GTCTTCAATTGCTTCATCACATATATGTATGGATTTATAGCTATGCATCT
GCATTTTTGATCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCG
GCCCT
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