EY692788

Overview
NameEY692788
Unique NameEY692788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.826e-11
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQ----FDMWEHAYYLITR*QR 288
            FFW S++P GG  P   +L+QI +DFGSF  F E+F   A   FGSG+ WLV            +K  N    + +  Q     D+WEHAYY+  R +R
Sbjct:   92 FFWHSIKPNGGGKPSGKILKQINEDFGSFEEFCEQFKAEATGQFGSGWAWLVYHNNRLQI----VKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKR 186          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSP-HQFDMWEHAYYL 270
            FW  M P GG  PK  V + I+KD G F  FKE F  AAL+ FGSG+ WL +  +++          + L    +P    D+WEHAYYL
Sbjct:   84 FWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSP-HQFDMWEHAYYL 270
            FW  M P GG  PK  V + I+KD G F  FKE F  AAL+ FGSG+ WL +  +++          + L    +P    D+WEHAYYL
Sbjct:   84 FWTVMSPNGGGEPKGEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSVTPDKKVVVESTANQDSPLFEGNTPILGLDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_RICPR (Superoxide dismutase [Mn/Fe] OS=Rickettsia prowazekii GN=sodB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.385e-11
Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLV--------LKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYLITR*QRT 291
            FFW S++P GG  P   V EQI KDFGSF  F  +F   A+  FGSG+ W+V        +K     +P +N        +M      D+WEHAYY+  R +R+
Sbjct:   92 FFWYSIKPHGGGKPSGKVFEQISKDFGSFEQFCAQFKQEAVGQFGSGWTWVVYHDNKLQIIKTSNAGTPIVN--------FMKPILACDVWEHAYYIDYRNKRS 187          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 36/89 (40.45%), Postives = 43/89 (48.31%), Query Frame = 1
Query:    4 FFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            F+W  M+PGGG  P   + ++I  DFGSF  F E F  A  T FGSG+ WLVL                     T     D+WEHAYYL
Sbjct:   81 FYWNCMKPGGGGQPSGALADKINADFGSFDAFVEAFKQAGATQFGSGWAWLVLDNGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYL 169          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:   77 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 167          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:   77 FWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 167          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:   77 FWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 167          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
The following BLAST results are available for this feature:
BLAST of EY692788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODF_RICBR1.826e-1139.39Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODM_XANCP2.385e-1141.57Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODM_XANC82.385e-1141.57Superoxide dismutase [Mn] OS=Xanthomonas campestri... [more]
SODF_RICPR2.385e-1138.46Superoxide dismutase [Mn/Fe] OS=Rickettsia prowaze... [more]
SODF_SYNY33.115e-1140.45Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODM_PONPY4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_PANTR4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_MACMU4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFA4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692788 ID=EY692788; Name=EY692788; organism=Citrus sinensis; type=EST; length=448bp
GACTTCTTTTGGGAGTCCATGCAGCCTGGAGGAGGTGACATACCCAAATA
TGGAGTACTTGAGCAGATTGAAAAGGACTTTGGTTCCTTTACAAATTTCA
AAGAGAAGTTTATAGGAGCTGCCCTCACATTGTTTGGCTCTGGCTATGTT
TGGCTTGTTTTGAAGAGGGAAGAGAGAAGCTCGCCGTGGTTAAACATCAA
ATGCATAAATNCACTTGTGTGGATGACATCCCCACATCAGTTTGATATGT
GGGAGCATGCTTATTATCTGATTACAAGATGACAAAGGACTATGCAAACG
TGTTATGAACCACCTGTGTCTTGAATGCTGCATGTCACGAATGGCTGTGC
AAAGCCTTTCTGATTTAGGCGACCCAAATCCCATGCTTGAAAGTTCTTTT
CAAAACTCAACAAAGATGTGCAAGCCCTAAGCACTGCTAAGGTTAAAA
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