EY692788

Overview
NameEY692788
Unique NameEY692788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/88 (39.77%), Postives = 44/88 (50.00%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW S+ P GG  P   +   IE +FG+F  FKEKF  AA   FGSG+ WLV+   +        +        T     D+WEHAYYL
Sbjct:   85 FWSSLSPNGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNGKLEIVSTANQDSPLSEGKTPVLGLDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 38/91 (41.76%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    1 DFFWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSP-HQFDMWEHAYYL 270
            + ++   +PG G  PK  + E I+K FGSF  FKE+F  A  TLFGSG+VWL      + S        N +    +P   FD+WEHAYYL
Sbjct:   75 NLYFTQFRPGKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGKLSIEKEPNAGNPVRKGLNPLLGFDVWEHAYYL 165          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.314e-11
Identity = 37/93 (39.78%), Postives = 51/93 (54.84%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQF-----DMWEHAYYL 270
            FW+ M P  G  P   V + I++ FGSF  FK++F  A    FGSG+ WLV  R+ + S        N L  M++P+ +     D+WEHAYYL
Sbjct:  126 FWQIMAPKAGGTPTGAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGKLSITSTANQDNPL--MSNPNAYPILGNDVWEHAYYL 216          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_BACCA (Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 6.940e-11
Identity = 36/88 (40.91%), Postives = 45/88 (51.14%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW  + P GG  P   + E I K FGSFT FK++F  AA   FGSG+ WLV+   E        +    +   T     D+WEHAYYL
Sbjct:   85 FWTILSPNGGGEPTGELAEAINKKFGSFTAFKDEFSKAAAGRFGSGWAWLVVNNGELEITSTPNQDSPIMEGKTPILGLDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK    ++ + GSG+ WL   +E+   + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 33/91 (36.26%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKE+    ++ + GSG+ WL   +E+   + +   N   +     +      D+WEHAYYL
Sbjct:   82 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAVSVGVQGSGWGWLGFNKEQGHLQIAACANQDPLQGTTGLIPLLGIDVWEHAYYL 172          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK    ++ + GSG+ WL   +E+   + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYL 191          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREERSSPWLNIKCINXLVWMTSPHQFDMWEHAYY 267
            FWE + PGG + P   V + I+  FGSF  FKE+F  AA T FGSG+ WL++  +  +      +    +   T     D+WEHAYY
Sbjct:   84 FWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLIVDGDSVAVTSTPNQDSPVMEGKTPVLGLDVWEHAYY 170          
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKE+   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:   77 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 167          
The following BLAST results are available for this feature:
BLAST of EY692788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODM_LISIV4.069e-1139.77Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_HUMAN4.069e-1138.46Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODF_PORGI4.069e-1141.76Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM1_PLEBO5.314e-1139.78Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODM_BACCA6.940e-1140.91Superoxide dismutase [Mn] OS=Bacillus caldotenax G... [more]
SODM_RAT9.064e-1137.36Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_RABIT9.064e-1136.26Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_MOUSE9.064e-1137.36Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]
SODM_KLEPL9.064e-1139.08Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODM_CEBAP9.064e-1137.36Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692788 ID=EY692788; Name=EY692788; organism=Citrus sinensis; type=EST; length=448bp
GACTTCTTTTGGGAGTCCATGCAGCCTGGAGGAGGTGACATACCCAAATA
TGGAGTACTTGAGCAGATTGAAAAGGACTTTGGTTCCTTTACAAATTTCA
AAGAGAAGTTTATAGGAGCTGCCCTCACATTGTTTGGCTCTGGCTATGTT
TGGCTTGTTTTGAAGAGGGAAGAGAGAAGCTCGCCGTGGTTAAACATCAA
ATGCATAAATNCACTTGTGTGGATGACATCCCCACATCAGTTTGATATGT
GGGAGCATGCTTATTATCTGATTACAAGATGACAAAGGACTATGCAAACG
TGTTATGAACCACCTGTGTCTTGAATGCTGCATGTCACGAATGGCTGTGC
AAAGCCTTTCTGATTTAGGCGACCCAAATCCCATGCTTGAAAGTTCTTTT
CAAAACTCAACAAAGATGTGCAAGCCCTAAGCACTGCTAAGGTTAAAA
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