EY692788

Overview
NameEY692788
Unique NameEY692788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length448
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 1 
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKEK    ++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:  101 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGFNKERGCLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYL 191
[Close]
BLAST of EY692788 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    7 FWESMQPGGGDIPKYGVLEQIEKDFGSFTNFKEKFIGAALTLFGSGYVWLVLKREE---RSSPWLNIKCINXLVWMTSPHQFDMWEHAYYL 270
            FW ++ P GG  PK  +LE I++DFGSF  FKE+   A++ + GSG+ WL   +E    + +   N   +     +      D+WEHAYYL
Sbjct:   77 FWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYYL 167
The following BLAST results are available for this feature:
BLAST of EY692788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SODM_CAVPO9.064e-1137.36Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CALJA9.064e-1137.36Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-004-D11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692788 ID=EY692788; Name=EY692788; organism=Citrus sinensis; type=EST; length=448bp
GACTTCTTTTGGGAGTCCATGCAGCCTGGAGGAGGTGACATACCCAAATA
TGGAGTACTTGAGCAGATTGAAAAGGACTTTGGTTCCTTTACAAATTTCA
AAGAGAAGTTTATAGGAGCTGCCCTCACATTGTTTGGCTCTGGCTATGTT
TGGCTTGTTTTGAAGAGGGAAGAGAGAAGCTCGCCGTGGTTAAACATCAA
ATGCATAAATNCACTTGTGTGGATGACATCCCCACATCAGTTTGATATGT
GGGAGCATGCTTATTATCTGATTACAAGATGACAAAGGACTATGCAAACG
TGTTATGAACCACCTGTGTCTTGAATGCTGCATGTCACGAATGGCTGTGC
AAAGCCTTTCTGATTTAGGCGACCCAAATCCCATGCTTGAAAGTTCTTTT
CAAAACTCAACAAAGATGTGCAAGCCCTAAGCACTGCTAAGGTTAAAA
back to top