EY692726

Overview
NameEY692726
Unique NameEY692726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF44_DANRE (RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +      K  G+ +  IE LP +RF       +   C VC + FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct:  352 NYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRVLP-CNHEFHAKCVDKWLKTNRTCPICR 437          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF38_MOUSE (RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +      K  G+ +  IE LP +RF       +   C VC+  FE  ++LR+LP C H FH +CVD WL  + TCP+CR
Sbjct:  422 NYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKGNRTCPICR 507          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF38_HUMAN (RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +      K  G+ +  IE LP +RF       +   C VC+  FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct:  419 NYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 504          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL3D_ARATH (RING-H2 finger protein ATL3D OS=Arabidopsis thaliana GN=ATL3D PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.656e-12
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  434 TNRKNSGIDRTVIESLPIFRFGALRGHKDG-LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 667
            T  ++ G+D   I SLP+      R  ++   EC +CL  FE  E +++LP C H +H ECVD WL + S+CPLCR  +
Sbjct:   74 TRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSI 152          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF44_HUMAN (RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +    + K  G+ +  IE LP +RF       +   C VC + FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct:  336 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLP-CNHEFHTKCVDKWLKANRTCPICR 421          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  446 NSGIDRTVIESLPIFRFGALRGHKDGL--ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 661
            N+G+ R  ++S     +     +  GL  ECA+CL+ F   E ++LLP C H FHV C+D WL SHS+CP CR+
Sbjct:  102 NTGVKRKALKSFQTVSYST-ELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRH 174          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.081e-12
Identity = 29/72 (40.28%), Postives = 45/72 (62.50%), Query Frame = 2
Query:  449 SGIDRTVIESLPIFRFGALRG--HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            +G+D++ IES      G  R     +G+ C +CL+ +   E +R +P+C H FHV+C+D WL  HS+CP+CR
Sbjct:  224 TGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCR 295          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF44_RAT (RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +    + K  G+ +  IE LP +RF       +   C VC + FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct:  254 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 339          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: RNF44_MOUSE (RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  404 SHSALINPSST--NRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ++ AL+N +    + K  G+ +  IE LP +RF       +   C VC + FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct:  311 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 396          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.942e-12
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  425 PSSTNRKNS--GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 676
            P++ N   +  G+ + + E LPI  +       D  +C+VCL  ++  E L+ +P C H FH+EC+D WL SH+TCPLCR  + P+
Sbjct:   61 PTNNNLSTAELGLSKDIREMLPIVIYKESFTVND-TQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPK 145          
The following BLAST results are available for this feature:
BLAST of EY692726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RNF44_DANRE4.656e-1239.08RING finger protein 44 OS=Danio rerio GN=rnf44 PE=... [more]
RNF38_MOUSE4.656e-1239.08RING finger protein 38 OS=Mus musculus GN=Rnf38 PE... [more]
RNF38_HUMAN4.656e-1239.08RING finger protein 38 OS=Homo sapiens GN=RNF38 PE... [more]
ATL3D_ARATH4.656e-1240.51RING-H2 finger protein ATL3D OS=Arabidopsis thalia... [more]
RNF44_HUMAN6.081e-1239.08RING finger protein 44 OS=Homo sapiens GN=RNF44 PE... [more]
ATL1L_ARATH6.081e-1243.24RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL1E_ARATH6.081e-1240.28RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
RNF44_RAT7.942e-1239.08RING finger protein 44 OS=Rattus norvegicus GN=Rnf... [more]
RNF44_MOUSE7.942e-1239.08RING finger protein 44 OS=Mus musculus GN=Rnf44 PE... [more]
ATL4F_ARATH7.942e-1238.37RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-G08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692726 ID=EY692726; Name=EY692726; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGGAAACCCCATCTCACAGAATCTCTCCAAAAACTTTTCAT
TTTCTTCCAAAAAAGAAAGGGAAAAAAAAAAAAAAAGAACACCAGCGGCA
GACATGGGCGTTTTCGAGCCCCCATCACAAATCTCCGTCTGGGTTTCTTT
CCTCATCGTCATCCTGATTACGCCTTCTCTCGCGGATAATCACGATTCGA
GAACAACAAACAACAACTCATTATGCCCCCCTCCTTTCATTCAAGATAAA
GCAAATGCAAATGCAAATAAGAATTTCTCACCATTTAAGCCGAGCATGGC
AGTCGTAGTTGGTGTTTTAACCACCATGTTCTCTATGACTTTCCTTCTGT
TACTCTACGCCAAGCACTGCAAGCGTGGAAACAGCGTCGTCGGTTACGGT
ACTAGTCACTCCGCTCTGATAAATCCATCCTCCACCAATCGCAAGAACTC
AGGGATTGACCGTACGGTGATCGAGTCGTTACCGATATTCAGATTCGGTG
CACTCAGGGGTCACAAGGACGGGCTCGAATGCGCTGTTTGCTTGACTAGG
TTCGAGCCAACGGAAGTTTTAAGACTCTTGCCCAAATGCAAGCACGCCTT
CCACGTGGAGTGTGTTGATACTTGGCTCGACAGTCACTCTACTTGCCCTC
TTTGTCGATACCGAGTTGACCCTGAAGATATTCTTCTCAGCTTTGAAAAG
ATATGGACTCCGCTGAGTCGGAGGCCGNGCACCCGAGCCCACCCGACCAC
CCCGAGTTTGACGAGTTCCGGGAGGCACTCTACTTGGGAGGTCGGTTCGT
GTCTAAAATCGACTCGTCTAGGAGTCGCTTGAGGGGCTTTTCAA
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