EY692726

Overview
NameEY692726
Unique NameEY692726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length844
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL2J_ARATH (RING-H2 finger protein ATL2J OS=Arabidopsis thaliana GN=ATL2J PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.355e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 2
Query:  404 SHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKD------GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            S S+  + SS +  ++ +D   I    +      + HKD      G EC+VCL  F  ++ LR L +CKHAFHV C++TWL  H  CP+CR
Sbjct:   94 SSSSRTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICR 184          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 2
Query:  527 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            ECA+C+T F   E +R+LP C HAFHV C+D WL S S+CP CR
Sbjct:  112 ECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 46/152 (30.26%), Postives = 64/152 (42.11%), Query Frame = 2
Query:  236 FIQDKANANANKNFSPFKPSMAVVVGVXXXXXXXXXXXXXYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRF-----------GALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            F    ANANAN +FS     +  ++ V                  + GN VVG                   G+D +VI S P F F           G   G      C++CL  +   E+LR++P+CKH FHV C+D WL  + +CP+CR
Sbjct:   58 FSASAANANANASFSDRGVIVPRIIFVAEDDDL------------ESGNVVVG-------------------GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCR 178          
BLAST of EY692726 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.148e-11
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  452 GIDRTVIESLPIFRFG--ALRGHKDGL------ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 658
            G+D+ VI S P F F         DG        C++CL  ++  E+LR++P+CKH FH+ C+D WL  + +CP+CR
Sbjct:  104 GLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCR 180          
The following BLAST results are available for this feature:
BLAST of EY692726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
ATL2J_ARATH1.355e-1138.46RING-H2 finger protein ATL2J OS=Arabidopsis thalia... [more]
ATL4L_ARATH3.941e-1159.09RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]
ATL3K_ARATH5.148e-1130.26RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL2M_ARATH5.148e-1138.96RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-G08-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692726 ID=EY692726; Name=EY692726; organism=Citrus sinensis; type=EST; length=844bp
CCACGCGTCCGGAAACCCCATCTCACAGAATCTCTCCAAAAACTTTTCAT
TTTCTTCCAAAAAAGAAAGGGAAAAAAAAAAAAAAAGAACACCAGCGGCA
GACATGGGCGTTTTCGAGCCCCCATCACAAATCTCCGTCTGGGTTTCTTT
CCTCATCGTCATCCTGATTACGCCTTCTCTCGCGGATAATCACGATTCGA
GAACAACAAACAACAACTCATTATGCCCCCCTCCTTTCATTCAAGATAAA
GCAAATGCAAATGCAAATAAGAATTTCTCACCATTTAAGCCGAGCATGGC
AGTCGTAGTTGGTGTTTTAACCACCATGTTCTCTATGACTTTCCTTCTGT
TACTCTACGCCAAGCACTGCAAGCGTGGAAACAGCGTCGTCGGTTACGGT
ACTAGTCACTCCGCTCTGATAAATCCATCCTCCACCAATCGCAAGAACTC
AGGGATTGACCGTACGGTGATCGAGTCGTTACCGATATTCAGATTCGGTG
CACTCAGGGGTCACAAGGACGGGCTCGAATGCGCTGTTTGCTTGACTAGG
TTCGAGCCAACGGAAGTTTTAAGACTCTTGCCCAAATGCAAGCACGCCTT
CCACGTGGAGTGTGTTGATACTTGGCTCGACAGTCACTCTACTTGCCCTC
TTTGTCGATACCGAGTTGACCCTGAAGATATTCTTCTCAGCTTTGAAAAG
ATATGGACTCCGCTGAGTCGGAGGCCGNGCACCCGAGCCCACCCGACCAC
CCCGAGTTTGACGAGTTCCGGGAGGCACTCTACTTGGGAGGTCGGTTCGT
GTCTAAAATCGACTCGTCTAGGAGTCGCTTGAGGGGCTTTTCAA
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