EY692657

Overview
NameEY692657
Unique NameEY692657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.691e-37
Identity = 86/194 (44.33%), Postives = 113/194 (58.25%), Query Frame = 2
Query:  200 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLS--NSASQHLATLKGHRGPVWQVAWAHPKFG-SILASCSYDGQVIIWKEGNQNDWTQA---HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQAHPVGVTSVSWAPGMAPGALVGLGLLDPXQKMASCGCDILXRVWR 760
            KIE  HE  +H  A+++YG RLAT SSD ++KI  ++  N++S  L TL GH GPVW   W HP  G ++LA+C YDG+V+IWKE       Q    H    H +SVN + WAPHE GL L CGS+DG ISV     DG   +T+I D AH  GV S+SWAP M   +          ++  S G D L ++W+
Sbjct:    3 KIENAHEGVIHHAALNYYGTRLATCSSDKTVKIFEINDVNNSSSLLETLVGHEGPVWYADWCHPSLGENLLATCGYDGKVLIWKESGHGGKMQIIGKHAV--HSASVNCVKWAPHEYGLILLCGSADGKISV-VELKDGQIASTKILDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWK 193          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.651e-27
Identity = 61/141 (43.26%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + V+ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.463e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 3.463e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.463e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S S   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.906e-27
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S + + H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 5.906e-27
Identity = 59/141 (41.84%), Postives = 87/141 (61.70%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S + + H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.714e-27
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S +   H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL LA  S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.114e-25
Identity = 57/141 (40.43%), Postives = 84/141 (59.57%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+    +    H  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL L   S+DG + ++ A
Sbjct:    4 AKSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEA 144          
BLAST of EY692657 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.900e-25
Identity = 57/141 (40.43%), Postives = 86/141 (60.99%), Query Frame = 2
Query:  194 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE--GNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 586
            A+ I   H+D +HDV+ DF+G+R+AT SSD S+K+   S++   +  A+ K H G VW+V WAHP+FG +LASCS+D    +W+E  G  ND       W +  T  D ++SV  + +AP  +GL L   S+DG + ++ A
Sbjct:    4 ARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEA 144          
The following BLAST results are available for this feature:
BLAST of EY692657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SC132_CANGA3.691e-3744.33Protein transport protein SEC13-2 OS=Candida glabr... [more]
SEH1_MOUSE2.651e-2743.26Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_PONAB3.463e-2742.55Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN3.463e-2742.55Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN3.463e-2742.55Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1B_XENLA5.906e-2741.84Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA5.906e-2741.84Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_XENTR7.714e-2741.84Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_DANRE1.114e-2540.43Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_OSMMO1.900e-2540.43Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-003-A09-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692657 ID=EY692657; Name=EY692657; organism=Citrus sinensis; type=EST; length=925bp
CCACGCGTCCGCCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAG
CCGGTGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGG
AGCTGAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTT
GAAGTTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAA
AAATTGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTC
TATGGAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAAT
TGGTTTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATA
GAGGTCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATC
CTTGCTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAA
TCAAAATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTG
TCAACTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGT
GGATCTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGG
CTGGGATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTG
TTTCATGGGCCCCGGGCATGGCTCCTGGTGCTTTAGTTGGATTGGGCTTA
CTGGATCCTNGTCAGAAAATGGCTTCTTGTGGTTGTGATATACTGNTAAG
GGTGTGGAGATGTATAATGGGATTTGGAAGATGGGATGCTTCCCTGCCCT
TCANANCACANNTGATGGGTGCNGAGCGTGGCATGGGCACCAAACTGGGT
CTTNCAAATCACAATTGCAGTGCATCACAGATGGGACGTTGTATTTGACC
TGTGCCAGGAAGGGAGCATGGAGGT
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