EY692616

Overview
NameEY692616
Unique NameEY692616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   53 TAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHEA 259
            TAG ++ CKAA+AWE  KPL I+ +EVAPP+A EVRIK   T +CR+D   +    + P  +  LGHEA
Sbjct:    2 TAGKVIKCKAAIAWEIKKPLSIEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPLPMV-LGHEA 69          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   44 MSSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDL-LFLESRVRHPCFLAYLGHEA---NRGVGNGWESV 292
            M+ T G ++TCKAAV W    PL+IQ++ V PPQ MEVR+K  Y+S+C TDL  +  +      F   LGHEA      VG G + V
Sbjct:    1 MAETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERAFPRILGHEAVGIVESVGEGVKDV 87          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   50 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHE 256
            STAG ++ CKAAV WE  KP  I+D+EVAPP+A EVRIK   T +CR+D   +   +  P   A LGHE
Sbjct:    2 STAGKVIKCKAAVLWELHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSGTLVTP-LPAVLGHE 69          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.630e-11
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   50 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHEAN---RGVGNGWESV 292
            STAG ++ C+AAV WE  KP  I++VEV PP+A EVRIK   T +CR+D   +   +  P   A LGHEA      +G G  +V
Sbjct:    2 STAGKVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITP-LPAILGHEAGGIVESIGEGVTTV 84          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 37/94 (39.36%), Postives = 58/94 (61.70%), Query Frame = 2
Query:   68 LTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHEANRGVGNGWESVFQL*IRGSPTPRITREWGD 349
            + CKAAV+ +AG+PL+++++ VAPPQ  EVRI+   T+LC +D+ F + +V   CF   LGHEA   V +  E+V ++    +  P    + GD
Sbjct:   17 IRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGD 110          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   50 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHEAN---RGVGNGWESV 292
            ST G ++ CKAA+ W+ G P  I++VEVAPP+A EVRIK   T LC T++  L S+     +   LGHE       +G G  +V
Sbjct:    2 STTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTV 85          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 2
Query:   50 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHEAN---RGVGNGWESV 292
            STAG ++ CKAAV W+ G PL +++++VAPP+  EVR+K     +C TD+  L+++   P     +GHE       VG G  +V
Sbjct:    2 STAGKVIRCKAAVLWKPGAPLTMEEIDVAPPKGKEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEGVSTV 85          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 36/69 (52.17%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   50 STAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHE 256
            STAG ++ CKAAV WE  KP  I+D+EVAPP+A EVRIK   T +CR+D   +   +  P   A LGHE
Sbjct:    2 STAGKVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTP-LPAVLGHE 69          
BLAST of EY692616 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 2
Query:   47 SSTAGLILTCKAAVAWEAGKPLIIQDVEVAPPQAMEVRIKNQYTSLCRTDLLFLESRVRHPCFLAYLGHE 256
            S   G ++ CKAAVAWEA KPL ++++EVAPP+A EVR+K   T++C TD   L        F   LGHE
Sbjct:    1 SKMDGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHE 70          
The following BLAST results are available for this feature:
BLAST of EY692616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
ADH1A_UROHA3.300e-1150.72Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHL3_ARATH4.310e-1144.83Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADH1_MOUSE5.630e-1152.17Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1_GEOKN5.630e-1145.24Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADHL7_ARATH7.352e-1139.36Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADH6_PONAB7.352e-1142.86Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH6_PERMA7.352e-1139.29Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH1_RAT7.352e-1152.17Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADHX_MYXGL9.603e-1148.57Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-700-002-E11-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692616 ID=EY692616; Name=EY692616; organism=Citrus sinensis; type=EST; length=754bp
CCACGCGTCCGTTTGTGTTCATTCTCATTGGGAATCATCACCAATGTCGA
GCACTGCTGGTCTTATTCTTACCTGCAAAGCGGCGGTTGCTTGGGAAGCA
GGGAAGCCGCTGATCATTCAGGATGTGGAGGTTGCTCCTCCACAGGCCAT
GGAAGTGAGGATCAAGAATCAATACACCTCTCTTTGCCGCACTGATCTNC
TATTTCTGGAGTCAAGGGTCAGACACCCTTGCTTCCTCGCATATTTGGGC
CATGAAGCCAACAGGGGTGTGGGAAATGGTTGGGAAAGTGTTTTCCAACT
TTGAATAAGGGGATCCCCTACTCCCCGGATTACACGGGAGTGGGGGGATG
TAAACACGCACGGCCGAGGAAACCATATGGGGGACCTTTGAGAATAAACC
AGTCCGGGAGGCTTGTTTCTGATGGGAACCTAAGGTTTCACCACAGGGGA
CCTGAAATACCTCCTTGGACAACACCTTTAAGAGGAACATGTGTTAATTA
TGAGGGGGTGGAAAACATACTCTGGACCTTTTGAACAACTCATTTCCTCG
TGCGGCCCCCAAGGGTTAGGGCACTCAGTGGGAAACTCAAAAGGTCCCCA
CCCCGTCTTTGTCCCTCAGAGTGGGGTTAACTCTGCAAAGGCGCATATTG
CTGGACCAAAATTAGTGTTGATAGACTCCAGAGTTGCAACCCAAAGTTTG
ATACTGATTTGCACCCGTGACTGAGACATTCAGAGTATGCAAATACCACG
TGGA
back to top