EY692503

Overview
NameEY692503
Unique NameEY692503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY692503 vs. ExPASy Swiss-Prot
Match: AIFM1_DICDI (Apoptosis-inducing factor 1, mitochondrial OS=Dictyostelium discoideum GN=aif PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11
Identity = 59/236 (25.00%), Postives = 105/236 (44.49%), Query Frame = 3 
Query:   75 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWYKEKGIELILSTEIVKADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYAXKGIKIIKGTVLLDL 758
            + FKYVI+GGG +A Y A +   +  K   + +ISKE   PY+RP L+K+    +    +   +    SG ++ L       Y  + ++ I + +++   I  K +L   G + +Y   +IATG    +L        + K I   R ++D  KL E                ++G EL+ A+  N    NI +  ++PE   +  LF   ++ +        G+ +  GT++ D+
Sbjct:   94 EQFKYVIIGGGTAA-YHAIDKILENDKEATILLISKEYEVPYQRPPLTKSLWATKDDNVVNTLNFSDWSGKKQNLLYEQESAYGNEILQFIRTKKVIDLHIDEKLVLLNDGKLIRYDKCLIATGGEPRQLK---FTSTNDKKISTYRTVEDFRKLYE-VVKDGGKHVTVLGGGFLGSELTCAINSNFQDKNIKIDQIFPESGVLSTLFPDYLSKYATEEIIKSGVNVHTGTLIKDV 324
The following BLAST results are available for this feature:
BLAST of EY692503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AIFM1_DICDI3.551e-1125.00Apoptosis-inducing factor 1, mitochondrial OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-D02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692503 ID=EY692503; Name=EY692503; organism=Citrus sinensis; type=EST; length=939bp
CCACGCGTCCGCACTATAAATAGAAACAGAAGTCGTTGAGCATTTAACTT
TTTTTCGATCGATCAATGGCGGAGAAGAGCTTCAAGTACGTGATCCTCGG
TGGCGGTGTCTCTGCTGGATATGCAGCTAGGGAGTTTGCTAAGCAGGGTG
TTAAGCCAGGCGAGCTGGCAATTATCTCCAAAGAAGCAGTTGCTCCGTAT
GAGCGTCCAGCACTTAGCAAGGCATATCTTTTCCCTGAGGGAACTGCTAG
ACTTCCCGGTTTCCATGTCTGTGTTGGAAGTGGTGGAGAGAGACTGCTTC
CTGAGTGGTACAAAGAGAAAGGAATTGAATTGATCCTCAGCACGGAAATA
GTCAAAGCAGATATTGCTTCCAAGACTCTCCTTAGTGCAACTGGGCTTAT
CTTTAAGTACCAGATTTTAGTAATTGCAACTGGTTCTACAGTTTTACGGT
TGACTGATTTTGGTGTTGAAGGTGCTGATGCCAAAAATATCTTCTACTTA
AGAGAAATTGATGATGCTGATAAGCTGGTTGAAGCAATAAAAGCAAAGAA
GAATGGGAAGGCGGTGGTTGTTGGAGGAGGATACATTGGTCTTGAGCTTA
GTGCAGCTTTAAAAATAAATAATATTGATGTTAGCATGGTTTATCCTGAA
CCATGGTGCATGCCTCGTCTTTTCACTGCGGATATTGCTGCTTTCTATGA
GGGGTATTATGCCNATAAAGGAATCAAAATTATTAAGGGAACAGTGCTGT
TGGATTTACCACAAATGCCGATGGNAGAGTCAAAGAAGTGAAGCTGAAGG
ACGGCANGACTCTGGAAGCTGACATTGNNTGTTGTTGNTGTAAGAAGAAA
ACCTCTATATCATATTTAAAGGGCAGTTGCAAAGAATAAGAAGCATAAGA
CTGATGATTTTTCCAGACAATGCTGATGATTGGCACCTG
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