EY692489

Overview
NameEY692489
Unique NameEY692489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692489 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 9.069e-56
Identity = 86/104 (82.69%), Postives = 95/104 (91.35%), Query Frame = 3
Query:  282 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 593
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  LLGL PSVKR+MMY QGCFAGGTVLRLAKDLAEN
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 104          

HSP 2 Score: 56.9954 bits (136), Expect = 9.069e-56
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 2
Query:  593 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQXXXXXXXXXXXXXXDPDTSVERPCISL 769
            +K ARVL+VCSE TAVTFRGP++T +DSLVGQ              DP   VE P   +
Sbjct:  105 NKDARVLIVCSENTAVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEI 163          
BLAST of EY692489 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.052e-50
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 3
Query:  366 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 593
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 76          

HSP 2 Score: 68.5514 bits (166), Expect = 3.052e-50
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  593 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQXXXXXXXXXXXXXXDPDTSVERPCISL 769
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQ              DP   +E+P   +
Sbjct:   77 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPIPEIEKPIFEM 135          
BLAST of EY692489 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.471e-36
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 3
Query:  423 ITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 593
            ITHLI CTTS VDMPGADYQLTKLLGLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 56          

HSP 2 Score: 68.5514 bits (166), Expect = 1.471e-36
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  593 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQXXXXXXXXXXXXXXDPDTSVERPCISL 769
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQ              DP   +E+P   +
Sbjct:   57 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEM 115          
BLAST of EY692489 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.618e-20
Identity = 36/59 (61.02%), Postives = 39/59 (66.10%), Query Frame = 2
Query:  593 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQXXXXXXXXXXXXXXDPDTSVERPCISL 769
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVGQ              DP   VE+P   L
Sbjct:   24 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAVIIGADPVPEVEKPLFEL 82          

HSP 2 Score: 50.8322 bits (120), Expect = 1.618e-20
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 3
Query:  525 MMYQQGCFAGGTVLRLAKDLAEN 593
            MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAEN 23          
BLAST of EY692489 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.380e-16
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 3
Query:   75 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 590
            R + +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  LLGL   V+R  +   GC AG + LR A  LA+
Sbjct: 2778 RLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 21.1718 bits (43), Expect = 9.380e-16
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  605 RVLVVCSEITAVTF 646
            R+LVVC+E+ ++ F
Sbjct: 2951 RILVVCTEVCSLHF 2964          
The following BLAST results are available for this feature:
BLAST of EY692489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY9.069e-5682.69Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA3.052e-5096.05Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.471e-3692.98Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO1.618e-2061.02Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI9.380e-1630.23Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-B12-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692489 ID=EY692489; Name=EY692489; organism=Citrus sinensis; type=EST; length=936bp
CCACGCGTCCGAGCACGAGCCTCAAAACATATTCATTACGGGTTTAACTT
GCAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCC
GGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACC
AGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATG
ACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCAATGATTAA
GAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAATCCCAACA
TGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTG
GTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAAGA
ATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCACCT
CCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACTGCTCGGC
CTGCGCCCTTCCGTCAAGCGCTTCATGATGTACCAACAAGGATGTTTCGC
CGGCGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAACACAAGGG
CGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACTTTCCGCG
GCCCTGCCGATACTCATCTTGATTCTCTTGTGGGCCAGGCTTTGNTCGGN
GATGGTGCTGCTGCTGTGATCGGGGGTGCCGATCCTGACACGTCCGTCGA
GCGTCCGTGTATCAGCTTGTGTCGACTCNCAGACGATCTCCCTGATCTGA
CGTGCATTGACGACACTTGCGCGAGTCNGTCTCCTTCCATTTGCTAAGAC
GTCCCGGCTGATCTCAGATATAGAGAAACCTGTCGAAGCGTCCCCCCGTT
GCATCNCGATGGACTCATATCTGATCCTCCCCCGGG
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