EY692475

Overview
NameEY692475
Unique NameEY692475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDIB_HUMAN (Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.805e-82
Identity = 146/248 (58.87%), Postives = 195/248 (78.63%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGG 247          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 6.250e-82
Identity = 144/248 (58.06%), Postives = 197/248 (79.44%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGG 247          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDIB_PONAB (Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.250e-82
Identity = 145/248 (58.47%), Postives = 195/248 (78.63%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KR++    PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + T R++  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPGSPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGG 247          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 6.250e-82
Identity = 144/248 (58.06%), Postives = 197/248 (79.44%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMD+N YYGGES+S+  ++ L+KRF+   QPPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+Y+ FK ++GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  + + R++  K+ L  + IDF GH+LAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPGQPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQDVIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGG 247          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDIB_CANFA (Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 5.291e-81
Identity = 144/248 (58.06%), Postives = 194/248 (78.23%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            M+EEYDVIVLGTGL ECILSG+++V+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+N+D+IPKF++ANG LV++L++T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DE DP+T EG+D  +    E+  K+ L  + IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQDVIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGG 247          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDI1_SCHPO (Probable secretory pathway GDP dissociation inhibitor 1 OS=Schizosaccharomyces pombe GN=gdi1 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 9.024e-81
Identity = 146/247 (59.11%), Postives = 188/247 (76.11%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            MDEEYDVIVLGTGL EC+LSGLLSVDG KVLH+DRNDYYG +S+SLNL QL+  FR  EQ P  LG  RD+ VD++PKF++ANG L  +LI+TDVT+Y+ FK + GS+VY  G++ KVP  +MEALKSPLM +FEKRRA+KF  +V +Y E+DP T++ +++ R +   +  K+GL   T DFIGHA+AL+ DD YL +PA +T +R+ LYA S+A+F G SPYIYP   L ELP  FA L+A+YGG
Sbjct:    1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLNLTQLYALFRPGEQRPESLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAKVPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQSGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGG 246          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: GDI1_YEAST (Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae GN=GDI1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.761e-76
Identity = 137/251 (54.58%), Postives = 191/251 (76.10%), Query Frame = 3
Query:   66 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN----EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGG 806
            +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N    E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP   L ELP  FA L+A+YGG
Sbjct:    6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGG 255          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RABEP_DROME (Rab proteins geranylgeranyltransferase component A OS=Drosophila melanogaster GN=Rep PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.585e-23
Identity = 73/278 (26.26%), Postives = 128/278 (46.04%), Query Frame = 3
Query:   63 NMDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHL---------------------------GSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            ++ E++D++V+GTG  E  ++   S  G  VLH+D N+YYG   SS ++  L  R     +P + L                             SR +++D+ P+ + A G LV++LI +++ +Y  F+AVD   + + G++  VP +  +   +  + I EKR   KF     DY E D    + ++    T  E +    + +     +  A+A+        E     ++R + +  S+ R+ G +P+++P     ELP  F  L AVYGG  C
Sbjct:    4 DLPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFSMDALCARLDQEVEPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIKSNICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE-DKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE----GMQRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYC 275          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAE2_MOUSE (Rab proteins geranylgeranyltransferase component A 2 OS=Mus musculus GN=Chml PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.390e-17
Identity = 52/183 (28.42%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  267 SRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            SR +N+D++ K + + G+L+ +LI ++V++Y  FK V     + +GKV +VP +  +   S  + + EKR   KF  +  DY+++   + E  D  + +  + +    L  N   FI H++A+  +    +   LD ++  K + + + RF G +P+I+P     E+P  F  + AV+GG  C
Sbjct:  225 SRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFNSKELSMVEKRMLMKFLTFCLDYEQH---SDEYQDFKQCSFSDYLKTKKLTPNLQHFILHSIAMTSES---SCTTLDGLQATKNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVYC 400          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAE2_HUMAN (Rab proteins geranylgeranyltransferase component A 2 OS=Homo sapiens GN=CHML PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.959e-16
Identity = 48/182 (26.37%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  270 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            R +N+D++ K + + G L+ +LI +DV++Y+ FK V     + +GKV +VP +  +   S  + + EKR   KF  +  +Y+++     E     + +  E +    L  N   F+ H++A+  +    +   +D +   K + + + RF G +P+++P     E+P  F  + AV+GG  C
Sbjct:  227 RRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFNSKELTMVEKRMLMKFLTFCLEYEQH---PDEYQAFRQCSFSEYLKTKKLTPNLQHFVLHSIAMTSES---SCTTIDGLNATKNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGIYC 401          
The following BLAST results are available for this feature:
BLAST of EY692475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
GDIB_HUMAN2.805e-8258.87Rab GDP dissociation inhibitor beta OS=Homo sapien... [more]
GDIB_RAT6.250e-8258.06Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_PONAB6.250e-8258.47Rab GDP dissociation inhibitor beta OS=Pongo abeli... [more]
GDIB_MOUSE6.250e-8258.06Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]
GDIB_CANFA5.291e-8158.06Rab GDP dissociation inhibitor beta OS=Canis famil... [more]
GDI1_SCHPO9.024e-8159.11Probable secretory pathway GDP dissociation inhibi... [more]
GDI1_YEAST1.761e-7654.58Rab GDP-dissociation inhibitor OS=Saccharomyces ce... [more]
RABEP_DROME8.585e-2326.26Rab proteins geranylgeranyltransferase component A... [more]
RAE2_MOUSE5.390e-1728.42Rab proteins geranylgeranyltransferase component A... [more]
RAE2_HUMAN5.959e-1626.37Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692475 ID=EY692475; Name=EY692475; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGAACCCACAAAACCCTCTGAATCAGAAATCAAAAATCAAA
AATCAAATCATCAACATGGATGAAGAGTATGATGTCATCGTCTTGGGAAC
CGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATGGCCTCA
AGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCATCATCG
CTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACAACCTCC
TGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCCCGAAGT
TTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACTGATGTT
ACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTATAATAA
AGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTC
CACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTAT
GTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTT
GACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGTCTTGATGACA
ACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGT
TACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTATACGC
AGAGTCTATGGCACGATTTTCAGGAGGATCACCATACATTTACCCCTCTG
TATGGCTTGNAGAGCTGCCTCANGCCTTTGCTNCGCTTAATGCTGTTTAT
GGGGGACGTATATGTTGATAACCTGAGTGCAGGTAAAGTTGATGAAAAGG
NAANTANTCGTGTCCGTCAAAGGGGAACTGCCAGTGGCAAAAAATGTTTG
GATCCT
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