EY692475

Overview
NameEY692475
Unique NameEY692475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAE1_MOUSE (Rab proteins geranylgeranyltransferase component A 1 OS=Mus musculus GN=Chm PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 49/182 (26.92%), Postives = 93/182 (51.10%), Query Frame = 3
Query:  270 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y E+ P  ++  + T  T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++P     ELP  F  + AV+GG  C
Sbjct:  237 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAYEET--TFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSSTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYC 411          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAE1_HUMAN (Rab proteins geranylgeranyltransferase component A 1 OS=Homo sapiens GN=CHM PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 7.783e-16
Identity = 48/182 (26.37%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  270 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G+V +VP +  +   S  + + EKR   KF  +  +Y E  P  ++G +   +T  E +    L  N    + H++A+  +        +D +K  K +   + R+ G +P+++P     ELP  F  + AV+GG  C
Sbjct:  225 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGYE--EITFYEYLKTQKLTPNLQYIVMHSIAMTSETA---SSTIDGLKATKNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYC 399          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAE1_RAT (Rab proteins geranylgeranyltransferase component A 1 OS=Rattus norvegicus GN=Chm PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.264e-15
Identity = 48/184 (26.09%), Postives = 94/184 (51.09%), Query Frame = 3
Query:  270 RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESMARFSGGSPYIYPSVWLXELPXAFAXLNAVYGGRIC 815
            R +N+D++ + + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H++A+  +        +D +K  K + + + R+ G +P+++P     ELP  F  + AV+GG  C
Sbjct:  222 RRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLHSIAMTSE---TTSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYC 396          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAEP_YEAST (Rab proteins geranylgeranyltransferase component A OS=Saccharomyces cerevisiae GN=MRS6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.270e-14
Identity = 49/166 (29.52%), Postives = 83/166 (50.00%), Query Frame = 3
Query:   72 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLG------------------SSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD 515
            ++ DV++ GTG+ E +L+  L+  G  VLH+D+NDYYG  S++L + Q+ KR+  NE     +                   SSRD+ +D+ PK + A   L+ +LI + V +YL F+++     Y      K+  T  E      + +  KR   KF  +V +++
Sbjct:   45 DKVDVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQI-KRW-VNEVNEGSVSCYKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHTYENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNWE 208          
BLAST of EY692475 vs. ExPASy Swiss-Prot
Match: RAEP_CANAL (Rab proteins geranylgeranyltransferase component A OS=Candida albicans GN=MRS6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.060e-12
Identity = 51/161 (31.68%), Postives = 82/161 (50.93%), Query Frame = 3
Query:   81 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK-----------RFR-------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPA-TDMEALKSPLMGIFEKRRARKFFIYV 503
            DV+++GTGL+E IL+  LS  G +VLH+D N YYG   S+L + QL K           +F+       G +Q   +  +S+DY +D+ PK +     L+ +LI + V +YL F+++    V+ N     KV A T  +      + +  KR   KF  ++
Sbjct:    5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLTIEQLKKWCGDVNSGKIHQFQDAQIYIPGGKQSNQY--TSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFHVFENDDFQQKVNATTKQDIFTDKSLSLMTKRYLMKFLKFL 163          
The following BLAST results are available for this feature:
BLAST of EY692475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RAE1_MOUSE7.783e-1626.92Rab proteins geranylgeranyltransferase component A... [more]
RAE1_HUMAN7.783e-1626.37Rab proteins geranylgeranyltransferase component A... [more]
RAE1_RAT2.264e-1526.09Rab proteins geranylgeranyltransferase component A... [more]
RAEP_YEAST3.270e-1429.52Rab proteins geranylgeranyltransferase component A... [more]
RAEP_CANAL3.060e-1231.68Rab proteins geranylgeranyltransferase component A... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692475 ID=EY692475; Name=EY692475; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGAACCCACAAAACCCTCTGAATCAGAAATCAAAAATCAAA
AATCAAATCATCAACATGGATGAAGAGTATGATGTCATCGTCTTGGGAAC
CGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTTGATGGCCTCA
AGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGAGTCATCATCG
CTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATGAACAACCTCC
TGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATGATCCCGAAGT
TTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCATACTGATGTT
ACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCGTCTATAATAA
AGGAAAGGTCCACAAGGTGCCAGCAACTGATATGGAAGCGCTCAAATCTC
CACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTTTTTCATTTAT
GTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGGGAATGGACTT
GACCAGGGTGACCACTAGAGAGCTGATTGCGAAGTATGGTCTTGATGACA
ACACTATTGACTTCATTGGTCATGCATTGGCACTTCATAGAGATGATCGT
TACTTAAACGAACCTGCTCTTGATACAGTGAAGAGAATGAAGTTATACGC
AGAGTCTATGGCACGATTTTCAGGAGGATCACCATACATTTACCCCTCTG
TATGGCTTGNAGAGCTGCCTCANGCCTTTGCTNCGCTTAATGCTGTTTAT
GGGGGACGTATATGTTGATAACCTGAGTGCAGGTAAAGTTGATGAAAAGG
NAANTANTCGTGTCCGTCAAAGGGGAACTGCCAGTGGCAAAAAATGTTTG
GATCCT
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