EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICRS (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    +  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDVSAIVERIEYDPNRTAFIALIKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    +  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDVSAIVERIEYDPNRTAFIALIKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICPR (50S ribosomal protein L2 OS=Rickettsia prowazekii GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN  GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKTLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKIDISAIVERIEYDPNRTAFIALIKYDDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  +VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGI-VERVEYDPNRSSWIAPVRWIEGVQ 470
            + L+Q T GK  S GRN++GRIT+  RGGG K+  R ID KR    +   VER+EYDPNR+S+IA +R+ +G Q
Sbjct:   28 KPLKQLTEGKSSSGGRNNNGRITVRFRGGGHKQTYRIIDFKRRKLDVAAKVERIEYDPNRTSFIALIRYADGEQ 101
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_HYPNA (50S ribosomal protein L2 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rplB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.693e-13
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 3 
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + A+ K K V+AL Q    KG   GRN+ GRIT+ H+GGG KRL R++D KRT   I   VER+EYDPNR+++IA +++ +G
Sbjct:   21 RSALHKGKPVKALTQGLSSKG---GRNNQGRITVRHQGGGVKRLYRQVDFKRTRWDIPATVERLEYDPNRTAFIALIKYQDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_RECAM (60S ribosomal protein L2, mitochondrial OS=Reclinomonas americana GN=RPL2 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 36/66 (54.55%), Postives = 52/66 (78.79%), Query Frame = 3 
Query:  258 LRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVR 452
            +++ T+G  +SAGRN++GRIT++HRGGG K   R ID KR+  +I GIVER+EYDPNR+ +IA ++
Sbjct:   30 VKKLTVGMIESAGRNNTGRITVYHRGGGHKTKYRYIDFKRSNYNIPGIVERLEYDPNRTCFIALIK 95
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 36/72 (50.00%), Postives = 51/72 (70.83%), Query Frame = 3 
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ G+IT +HRGGG K+L R ID KR    +  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGKITSWHRGGGHKKLYRIIDFKRNKIDVSAIVERIEYDPNRTAFIALIKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_WOLWR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  261 RQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIE 461
            +  T GK  S GRN+ GRIT  HRGGG K+  R ID KR  S  GIVE++EYDPNRS ++A + + E
Sbjct:   31 KSLTSGKKSSGGRNNHGRITTRHRGGGHKKKYRVIDFKRNRSGQGIVEKIEYDPNRSGFLALISYKE 97
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_WOLPM (50S ribosomal protein L2 OS=Wolbachia pipientis wMel GN=rplB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.075e-12
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  261 RQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIE 461
            +  T GK  S GRN+ GRIT  HRGGG K+  R ID KR  S  GIVE++EYDPNRS ++A + + E
Sbjct:   31 KSLTSGKKSSGGRNNHGRITTRHRGGGHKKKYRVIDFKRNRSGQGIVEKIEYDPNRSGFLALISYKE 97
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL2_RICRS2.828e-1351.3950S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICRO2.828e-1351.3950S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICPR2.828e-1352.7850S ribosomal protein L2 OS=Rickettsia prowazekii ... [more]
RL2_RICAH2.828e-1351.3950S ribosomal protein L2 OS=Rickettsia akari (stra... [more]
RL2_METSB3.693e-1351.3550S ribosomal protein L2 OS=Methylocella silvestri... [more]
RL2_HYPNA3.693e-1350.0050S ribosomal protein L2 OS=Hyphomonas neptunium (... [more]
RM02_RECAM6.300e-1354.5560S ribosomal protein L2, mitochondrial OS=Reclino... [more]
RL2_RICPU6.300e-1350.0050S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_WOLWR1.075e-1253.7350S ribosomal protein L2 OS=Wolbachia sp. subsp. D... [more]
RL2_WOLPM1.075e-1253.7350S ribosomal protein L2 OS=Wolbachia pipientis wM... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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