EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_HAHCH (50S ribosomal protein L2 OS=Hahella chejuensis (strain KCTC 2396) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  258 LRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            L   T  K K+ GRN++GRIT+ H+GGG K+L R ID KRT   I  +VER+EYDPNR++ IA +++ +G
Sbjct:   30 LASLTEKKRKNGGRNNAGRITVRHQGGGHKQLYRVIDFKRTKDGIPAVVERLEYDPNRTAHIALLKYADG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.965e-12
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V++L   T GK  + GRN++GRI +  RGGG K+  R +D KRT   +  +VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKSL---TEGKHSAGGRNNTGRIVVRFRGGGHKQTYRIVDFKRTKVDMPAVVERLEYDPNRTAFIALIKYTDGTQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_ROSDO (50S ribosomal protein L2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            R ++  T G  K  GRN++GRIT+  +GGG+KRL R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   28 RPVKALTEGLSKHGGRNNTGRITMRRKGGGAKRLYRIVDFKRNKMDVAATVERIEYDPNRTAFIALVKYEDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKVL---TEGKHSNGGRNNTGRITVRFRGGGHKKTYRIVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYADGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_ORITI (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Ikeda) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L++   G  K+ GRN+ GRITI+HRG G K+L R ID KR    I   VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKKLAKGITKTGGRNNLGRITIWHRGKGHKQLYRMIDFKRRVFDIYATVERIEYDPNRTAFIALIKYDDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_METNO (50S ribosomal protein L2 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRT--TSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 470
            +  + K K V+AL   T GK  S GRN+ GR+T+  RGGG KR  R +D KR      +G VER+EYDPNR+++IA V +  G Q
Sbjct:   21 RSELYKGKPVKAL---TEGKISSGGRNNLGRVTVRFRGGGHKRTLRNVDFKRREHAGKVGTVERIEYDPNRTAFIALVTYEGGAQ 102          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_BRAJA (50S ribosomal protein L2 OS=Bradyrhizobium japonicum GN=rplB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.097e-12
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKR-TTSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V+AL   T GK  S GRN++GRIT+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKHSSGGRNNTGRITVRFRGGGHKQTLRIVDFKRDKVDAPATVERLEYDPNRTAFIALVKYEDGTQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOPT (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKRL---TEGKNSNGGRNNTGRITVRFRGGGHKQAYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOPA (50S ribosomal protein L2 OS=Rhodopseudomonas palustris GN=rplB PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKRL---TEGKNSNGGRNNTGRITVRFRGGGHKQAYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOP2 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain HaA2) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            M  + A+ K K V+ L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKTL---TEGKHSNGGRNNTGRITVRFRGGGHKKTYRLVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL2_HAHCH5.333e-1251.4350S ribosomal protein L2 OS=Hahella chejuensis (st... [more]
RL2_RHOPB6.965e-1243.6850S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_ROSDO9.097e-1247.3050S ribosomal protein L2 OS=Roseobacter denitrific... [more]
RL2_RHOP59.097e-1244.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_ORITI9.097e-1250.0050S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_METNO9.097e-1247.0650S ribosomal protein L2 OS=Methylobacterium nodul... [more]
RL2_BRAJA9.097e-1247.1350S ribosomal protein L2 OS=Bradyrhizobium japonic... [more]
RL2_RHOPT1.188e-1144.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOPA1.188e-1144.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_RHOP21.188e-1144.8350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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