EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_METRJ (50S ribosomal protein L2 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.188e-11
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGI---VERVEYDPNRSSWIAPVRWIEGVQ 470
            ++ + K K V+AL   T GK  S GRN+ GRIT+  RGGG KR+ R +D KR    +G+   VER+EYDPNR+++IA + + +G Q
Sbjct:   21 RRELYKGKPVKAL---TEGKSSSGGRNNLGRITVRFRGGGHKRVLRNVDFKR-RDQLGVAATVERIEYDPNRTAFIALINFPDGKQ 102          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_THICR (50S ribosomal protein L2 OS=Thiomicrospira crunogena (strain XCL-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.552e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  279 KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            K KS GRNS+GRIT+ H+GGG K+  R+ID KR    +  +VER+EYDPNR++ IA +++ +G
Sbjct:   38 KSKSGGRNSNGRITVRHQGGGHKQHYRQIDFKRNKDGVAAVVERLEYDPNRTAHIALLKYADG 100          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_METS4 (50S ribosomal protein L2 OS=Methylobacterium sp. (strain 4-46) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRT--TSSIGIVERVEYDPNRSSWIAPVRWIEGVQ 470
            +  + K K V+AL   T GK  S GRN+ GR+T+  RGGG KR  R +D KR      +G VER+EYDPNR+++IA V +  G Q
Sbjct:   21 RSELYKGKPVKAL---TEGKISSGGRNNLGRVTVRFRGGGHKRTLRNVDFKRREFAGKVGTVERIEYDPNRTAFIALVSYEGGGQ 102          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_LACS1 (50S ribosomal protein L2 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 3
Query:  204 GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            G R  T     +  + +  +   + K K+AGRN+ GRIT+ HRGGG KR  R ID KR   ++   V+ +EYDPNRS+ IA + + +GV+
Sbjct:   12 GRRNMTGSDFAEITKTKPEKSLLVSKSKTAGRNAYGRITVRHRGGGHKRKYRLIDFKRVKDNVPATVKAIEYDPNRSANIALLVYADGVK 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_HALHL (50S ribosomal protein L2 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rplB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.027e-11
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  204 GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            G R   K    +  +        + K K+ GRNS+GRIT  HRGGG K+  R+ID KR  + + G VER+EYDPNRS+ IA V + +G
Sbjct:   12 GRRFVVKTKDARLHQGGPYEPLVVQKSKTGGRNSNGRITTRHRGGGHKQRYRQIDFKRNKTGVPGKVERLEYDPNRSANIALVLYQDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_ACACA (60S ribosomal protein L2, mitochondrial OS=Acanthamoeba castellanii GN=RPL2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGV 467
            R ++  T G  + +GRN+ GRIT +HRGGG KR+ R ID KR   +I G V RVEYDP R+S IA + +  GV
Sbjct:    9 RPIKNLTFGLKRISGRNNQGRITRYHRGGGVKRMGRLIDYKRYIWNIFGFVHRVEYDPKRNSLIALIVYSNGV 81          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_ALCBS (50S ribosomal protein L2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  279 KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            K K+ GRN++GRIT  H+GGG K+  R ID +R    I G+VER+EYDPNR++ IA V++++G
Sbjct:   37 KAKNGGRNNNGRITTRHKGGGHKQKYRVIDFRRNKDGIAGVVERLEYDPNRTAHIALVKYLDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHORT (50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            + +++ T G  K+ GRN+ GR+T + RGGG+KR  R ID KRT   + G VER+EYDPNR+++IA + + +G Q
Sbjct:   28 KPVKKLTEGLVKTGGRNNHGRVTSWWRGGGNKRRYRLIDFKRTKVDVAGRVERLEYDPNRTAFIALITYEDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 470
            + A+ K K V++L   T GK  + GRN++GRIT+  RGGG K+  R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   21 RSALYKGKPVKSL---TEGKISNGGRNNTGRITVRFRGGGHKQTYRIVDFKRTKVDVPAKVERLEYDPNRTAFIALIKYEDGEQ 101          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_OCHA4 (50S ribosomal protein L2 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rplB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLK-RTTSSIGIVERVEYDPNRSSWIAPVRWIEG 464
            +  + K K V++L   T G  K  GRN++GRIT+  +GGG KR  R ID K R    +G VER+EYDPNR+++IA +R+ +G
Sbjct:   21 RSGLYKGKPVKSL---TEGLSKKGGRNNTGRITVRFQGGGHKRTYRFIDFKRRKLDVVGTVERLEYDPNRTAFIALIRYEDG 99          
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL2_METRJ1.188e-1146.5150S ribosomal protein L2 OS=Methylobacterium radio... [more]
RL2_THICR1.552e-1152.3850S ribosomal protein L2 OS=Thiomicrospira crunoge... [more]
RL2_METS42.027e-1147.0650S ribosomal protein L2 OS=Methylobacterium sp. (... [more]
RL2_LACS12.027e-1141.1150S ribosomal protein L2 OS=Lactobacillus salivari... [more]
RL2_HALHL2.027e-1144.3250S ribosomal protein L2 OS=Halorhodospira halophi... [more]
RM02_ACACA2.647e-1150.6860S ribosomal protein L2, mitochondrial OS=Acantha... [more]
RL2_ALCBS2.647e-1152.3850S ribosomal protein L2 OS=Alcanivorax borkumensi... [more]
RL2_RHORT3.457e-1147.3050S ribosomal protein L2 OS=Rhodospirillum rubrum ... [more]
RL2_RHOPS3.457e-1145.2450S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_OCHA43.457e-1146.3450S ribosomal protein L2 OS=Ochrobactrum anthropi ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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