EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.897e-11
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 3 
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            +  + K K V+ L   T GK  S GRN++GRIT+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA +++ +G
Sbjct:   21 RSGLYKGKPVKTL---TEGKSSSGGRNNNGRITVRFRGGGHKQTYRLVDFKRAKRDVSATVERLEYDPNRTAFIALIKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3 
Query:  222 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            + A+ K K V+ L   T G  KS GRN+ GRIT+  RGGG KR  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   21 RSALYKGKPVKDL---TEGLTKSGGRNNHGRITVRFRGGGHKRSYRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG 99
[Close]
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.701e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 3 
Query:  213 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            M  + A+ K K V+AL   T GK  S GRN++GRIT+   GGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKQSSGGRNNTGRITVRFLGGGHKQSYRTVDFKRDKVDVPATVERLEYDPNRTAFIALVKYQDG 99
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RL2_AZOC55.897e-1143.9050S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RL2_PARL17.701e-1147.5650S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_BRASO7.701e-1145.8850S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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