EY711581

Overview
NameEY711581
Unique NameEY711581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: BCER_BACSU (Sensory transduction protein bceR OS=Bacillus subtilis GN=bceR PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.049e-12
Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 1
Query:    7 LPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKLEA 465
            LP  DG      +R    VPIL LS+RD   + V ++  GADD++ KPF    L+A+I+A  RR     T  +T K   G   VD   + V      V LT  E  +L  +I  ++++++  +L+  +W  +     + L V++  LR+KL+A
Sbjct:   55 LPKFDGFHWCRLIRSRSNVPILFLSSRDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHHYNTEPSTIKTWCG-AAVDAEQNLVSNDKGSVELTKNEMFILKQLIEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDA 206          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: GRAR_STAES (Response regulator protein graR OS=Staphylococcus epidermidis (strain ATCC 12228) GN=graR PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 45/151 (29.80%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    7 LPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKL 459
            LP  DG     ++R    VPIL LS+RD   ++V +++ GADDY+ KPF    L+A+++A  RR  + G V     +++ +  VDL+   + +    + L+  E  +L  +I  +++++T   L+  +W  +     + L V++  LR+KL
Sbjct:   54 LPKYDGFYWCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFG-VEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALWDDEAFVSDNTLTVNVNRLRKKL 203          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: GRAR_STAEQ (Response regulator protein graR OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=graR PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.543e-11
Identity = 45/151 (29.80%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    7 LPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKL 459
            LP  DG     ++R    VPIL LS+RD   ++V +++ GADDY+ KPF    L+A+++A  RR  + G V     +++ +  VDL+   + +    + L+  E  +L  +I  +++++T   L+  +W  +     + L V++  LR+KL
Sbjct:   54 LPKYDGFYWCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFG-VEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALWDDEAFVSDNTLTVNVNRLRKKL 203          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: GRAR_STAHJ (Response regulator protein graR OS=Staphylococcus haemolyticus (strain JCSC1435) GN=graR PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.016e-11
Identity = 49/169 (28.99%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    7 LPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKLEADPAQPQYFITELQVGY 513
            LP  DG     ++R    VPIL LS+RD   ++V +++ GADDY+ KPF    L+A+++A  RR  + G     + + + +  VDL+   + +    ++L+  E  +L  +I+ Q++++T   L+  +W  +     + L V++  LR+KL +D        T++  GY
Sbjct:   54 LPKYDGFYWCRKIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYEFGAEEKRT-LNWQDALVDLSKDSIQKGDSVIYLSKTEMIILEMLIQKQNQIVTRDTLITALWDDEAFVSDNTLTVNVNRLRKKL-SDIGMDTQIETKVGKGY 220          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: TORR_ECOLI (TorCAD operon transcriptional regulatory protein torR OS=Escherichia coli (strain K12) GN=torR PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 LGLPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARI-----RAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLL--LEVWGLDYVDRAHYLRVHMAHLRQKLEAD 468
            + LPD +G  L   LR    V I++++ R    +++  L+ GADDY+TKP  + EL+ R+     R  L R  Q  T    +   F    ++++ H + R G P+ LT  EY +L A +     +L+  +LL  L    ++  D    + V +  LR KL AD
Sbjct:   54 INLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHT--QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPD-LRTVDVLIRRLRHKLSAD 213          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: GRAR_STAS1 (Response regulator protein graR OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=graR PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 48/173 (27.75%), Postives = 92/173 (53.18%), Query Frame = 1
Query:    7 LPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKLEADPAQPQYFITELQVGYRLVG 525
            LP  DG     ++R     PIL LS+RD   ++V +++ GADDY+ KPF    L+A+++A  RR  Q  ++     +++ +  +DL+   + ++   ++L+  E  +L  +++ Q++++T   L+  +W  +     + L V++  LR+KL AD        T++  GY   G
Sbjct:   54 LPKYDGFYWTRKIREVSNTPILFLSSRDNPMDQVMSMELGADDYVQKPFNTNVLIAKLQAIYRRVYQF-SLDEKRVLSWQDAILDLSKDSINKEDHQIYLSKTEMIILEMLVKKQNQIVTRDTLITALWDDEAFVSDNTLTVNVNRLRKKL-ADIDMNDAIETKIGKGYMAHG 224          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: TORR_ECO57 (TorCAD operon transcriptional regulatory protein torR OS=Escherichia coli O157:H7 GN=torR PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 1
Query:    1 LGLPDGDGKQLISELRGWLAVPILVLSARDREEEKVAALDAGADDYLTKPFGVPELLARI-----RAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLL--LEVWGLDYVDRAHYLRVHMAHLRQKLEAD 468
            + LPD +G  L   LR    V I++++ R    +++  L+ GADDY+TKP  + EL+ R+     R  L R  Q  T    +   F    ++++ H + R G P+ LT  EY +L A +     +L+  +LL  L    ++  D    + V +  LR KL AD
Sbjct:   54 INLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPYT--QDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPD-LRTVDVLIRRLRHKLSAD 213          
BLAST of EY711581 vs. ExPASy Swiss-Prot
Match: GLNR_STRCO (Transcriptional regulatory protein glnR OS=Streptomyces coelicolor GN=glnR PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 49/135 (36.30%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  118 DAGADDYLTKPFGVPELLARIRAQLRRHGQTGTVAATSKVAFGEIEVDLATHEVWRQGLPVHLTPIEYRLLCAMIRGQSRVLTHRQLLLEVWGLDYVDRAHYLRVHMAHLRQKLEADPAQPQYFITELQVGYRLV 522
            D G DD L    G  E+ AR+R    R  Q G   +  ++  G++ VD AT+    +G  + LT  E+ LL  + +   RV T  QLL EVWG DY      + VH+  LR KL   P       T   VGYR V
Sbjct:   89 DWGIDDVLLDTAGPAEVEARLRLATGRQ-QLGGDDSPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKL--GPEHESLIGTVRNVGYRFV 220          
The following BLAST results are available for this feature:
BLAST of EY711581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 208
Match NameE-valueIdentityDescription
BCER_BACSU9.049e-1232.03Sensory transduction protein bceR OS=Bacillus subt... [more]
GRAR_STAES1.543e-1129.80Response regulator protein graR OS=Staphylococcus ... [more]
GRAR_STAEQ1.543e-1129.80Response regulator protein graR OS=Staphylococcus ... [more]
GRAR_STAHJ2.016e-1128.99Response regulator protein graR OS=Staphylococcus ... [more]
TORR_ECOLI4.491e-1130.67TorCAD operon transcriptional regulatory protein t... [more]
GRAR_STAS14.491e-1127.75Response regulator protein graR OS=Staphylococcus ... [more]
TORR_ECO575.865e-1130.67TorCAD operon transcriptional regulatory protein t... [more]
GLNR_STRCO7.660e-1136.30Transcriptional regulatory protein glnR OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-009-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711581 ID=EY711581; Name=EY711581; organism=Citrus sinensis; type=EST; length=914bp
CTCGGCCTGCCGGACGGCGACGGCAAACAGTTGATCAGCGAACTGCGGGG
ATGGCTGGCGGTGCCGATCCTGGTGTTGTCGGCGCGGGATCGCGAAGAGG
AAAAAGTCGCCGCCCTGGACGCCGGCGCCGATGACTACCTGACCAAACCT
TTCGGCGTGCCCGAGTTACTGGCGCGCATCCGTGCGCAACTGCGTCGGCA
CGGGCAAACCGGCACCGTGGCGGCCACCAGCAAGGTGGCATTTGGCGAGA
TTGAGGTGGACCTGGCGACCCATGAAGTGTGGCGCCAAGGCCTGCCGGTG
CACCTGACGCCCATCGAATACCGCTTGCTGTGCGCGATGATTCGCGGGCA
GAGCCGGGTGCTCACCCATCGGCAGTTATTGCTTGAAGTGTGGGGACTGG
ACTACGTGGACCGCGCCCACTATCTGCGGGTGCATATGGCGCATCTGCGG
CAGAAGCTGGAGGCCGACCCGGCCCAGCCGCAGTACTTCATCACCGAGTT
GCAGGTGGGCTACCGACTGGTGGGCTTGTGAACAGATGCGCGGCGGCGAA
ATCGACAAACACGCGAATTTTCGGCGAGAGGTGCCGGCTGGATGGCCACA
GGGCCCAGAACTGACCCTGGTCATCGGAATGGCCGTCGAGCACGGGTTCC
AGCTGGGCCTCGGCGAGTGCTTCGCGGGCCAGGAAAGTCCGCACGTAGGC
AATGCCATGGGNCGTCATCGCAGCCCGGAGCATGGCTTCCATATTTGTTC
AAGTCAGGGCGGTGGGGCAGCGCATTNNGGTGATGGNCCGGGTGGCGGAT
AAGGTCCAGTCATGATTTTTCCNGTGGTGGCGAAGCGGTACGCAAACCGG
NTGATGCTCCAGTCCCTCAAGGAATTTGCCCGNCGNTGGCCCCCAGGACT
CGGGGATGGCCCAG
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