EY711460

Overview
NameEY711460
Unique NameEY711460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length962
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_BORPE (50S ribosomal protein L2 OS=Bordetella pertussis GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 57/164 (34.76%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  461 PYALEEACTVWEGVLIDQKDESTST--DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSGE---------WWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            P  LE   T+  G+    +  +T    ++P+ T IH IE+  GKG Q+AR+AGA A L+A+EGT A ++L SGEVR +   C AT+   G            G  R   V P + G           + P   PH GGE R     + R+P+    PW T  KG
Sbjct:  107 PRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAVLMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG---------VAMNPIDHPHGGGEGR---TGEAREPVS---PWGTPAKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_BORPA (50S ribosomal protein L2 OS=Bordetella parapertussis GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 57/164 (34.76%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  461 PYALEEACTVWEGVLIDQKDESTST--DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSGE---------WWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            P  LE   T+  G+    +  +T    ++P+ T IH IE+  GKG Q+AR+AGA A L+A+EGT A ++L SGEVR +   C AT+   G            G  R   V P + G           + P   PH GGE R     + R+P+    PW T  KG
Sbjct:  107 PRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAVLMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG---------VAMNPIDHPHGGGEGR---TGEAREPVS---PWGTPAKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_BORBR (50S ribosomal protein L2 OS=Bordetella bronchiseptica GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 57/164 (34.76%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  461 PYALEEACTVWEGVLIDQKDESTST--DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSGE---------WWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            P  LE   T+  G+    +  +T    ++P+ T IH IE+  GKG Q+AR+AGA A L+A+EGT A ++L SGEVR +   C AT+   G            G  R   V P + G           + P   PH GGE R     + R+P+    PW T  KG
Sbjct:  107 PRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGASAVLMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRG---------VAMNPIDHPHGGGEGR---TGEAREPVS---PWGTPAKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_BART1 (50S ribosomal protein L2 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 50/137 (36.50%), Postives = 68/137 (49.64%), Query Frame = 2
Query:  536 DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATV---------RTSGEWWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            +MP+ T IHN+E+  GKGGQ+AR+AGA A+L+ ++   A L+L SGE RL+S +C ATV           +    GR+R     P + G           + P   PH GGE R       R P+    PW    KG
Sbjct:  134 NMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRDHGMAILRLNSGEQRLVSSSCFATVGAVSNPDHGNINDGKAGRSRWRGKRPHVRG---------VAMNPVDHPHGGGEGR---TSGGRHPVS---PWGKPTKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_BARHE (50S ribosomal protein L2 OS=Bartonella henselae GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.306e-11
Identity = 56/164 (34.15%), Postives = 77/164 (46.95%), Query Frame = 2
Query:  461 PYALEEACTVWEGVLIDQKDESTST--DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATV---------RTSGEWWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            P  L+   +V  G  +D K  +     +MP+ T IHN+E+  GKGGQ+AR+AGA A+L+ ++   A L+L SGE RL+S  C ATV           +    GR+R     P + G           + P   PH GGE R       R P+    PW    KG
Sbjct:  107 PQRLDVGDSVIAGSNVDIKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGAYAQLVGRDQGMAILRLNSGEQRLVSSGCFATVGAVSNPDHANINDGKAGRSRWRGRRPHVRG---------VAMNPVDHPHGGGEGR---TSGGRHPVS---PWGKPTKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_THEM4 (50S ribosomal protein L2 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 2
Query:  536 DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATVRTSGE---------WWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEER 850
            ++P+ T IHN+E   GKGGQ+AR+AG   +L+AKEG  A L++PSGE+R +   C AT+   G            GR R    +P + G           + P   PH GGE R
Sbjct:  134 NIPVGTVIHNVEYIPGKGGQIARSAGTSCQLMAKEGKYALLRMPSGELRKVPVKCYATIGVVGNEDHKNEVDGKAGRVRWKGRKPHVRG---------VAMNPVDHPHGGGEGR 238          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_SILST (50S ribosomal protein L2 OS=Silicibacter sp. (strain TM1040) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 49/136 (36.03%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  539 MPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATV------RTSGEWW---GRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            MP+ T +HNIE+  GKGGQ+ARAAG  A+ + ++G  A ++L SGE+RL+ + C ATV        S + +   GR R     P + G           + P   PH GGE R       R P+    PW    KG
Sbjct:  135 MPIGTIVHNIEMKPGKGGQIARAAGTYAQFVGRDGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNYGKAGRMRHKGKRPSVRG---------VVMNPIDHPHGGGEGR---TSGGRHPV---TPWGKPTKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_RHOP5 (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisA53) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 54/164 (32.93%), Postives = 75/164 (45.73%), Query Frame = 2
Query:  461 PYALEEACTVWEGVLIDQKDESTST--DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSATV---------RTSGEWWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWKTS*KG 919
            P  L    TV  G  +D K  +     +MP+ T +HN+E+ +GKGGQ+AR+AG  A+L+ ++     ++L SGE RLI   C+AT+           S    GRTR +   P   G           + P   PH GGE R       R P+    PW    KG
Sbjct:  107 PQRLAVGDTVIAGAYVDVKPGNVMPLGNMPIGTIVHNVEMKIGKGGQIARSAGTYAQLVGRDHDYVIVRLNSGEQRLIHGRCTATIGAVSNPDHMNISIGKAGRTRWLGWRPHNRG---------VVMNPIDHPHGGGEGR---TSGGRHPV---TPWGKPTKG 255          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_PSEAE (50S ribosomal protein L2 OS=Pseudomonas aeruginosa GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  536 DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSAT----------VRTSGEWWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWK 904
            ++P+ + +H IE+  GKG Q+AR+AGA A+L+A+EG   TL+L SGE+R +   C AT          +R+ G+  G TR   V P + G           + P   PH GGE R    +    P GL    K
Sbjct:  134 NIPVGSTVHGIELKPGKGAQIARSAGASAQLVAREGAYVTLRLRSGEMRKVLAECRATLGEVSNSEHSLRSLGK-AGATRWRGVRPTVRG---------VAMNPVDHPHGGGEGRTSAGRHPVSPWGLQTKGK 256          
BLAST of EY711460 vs. ExPASy Swiss-Prot
Match: RL2_PSEAB (50S ribosomal protein L2 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.236e-11
Identity = 47/133 (35.34%), Postives = 67/133 (50.38%), Query Frame = 2
Query:  536 DMPLRTAIHNIEITLGKGGQLARAAGAVAKLIAKEGTSATLKLPSGEVRLISKNCSAT----------VRTSGEWWGRTRIVWVEPDLNGG*ESVL**EE*L*PCKPPHWGGEERLQMVKKDRQPLGLSCPWK 904
            ++P+ + +H IE+  GKG Q+AR+AGA A+L+A+EG   TL+L SGE+R +   C AT          +R+ G+  G TR   V P + G           + P   PH GGE R    +    P GL    K
Sbjct:  134 NIPVGSTVHGIELKPGKGAQIARSAGASAQLVAREGAYVTLRLRSGEMRKVLAECRATLGEVSNSEHSLRSLGK-AGATRWRGVRPTVRG---------VAMNPVDHPHGGGEGRTSAGRHPVSPWGLQTKGK 256          
The following BLAST results are available for this feature:
BLAST of EY711460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BORPE6.306e-1134.7650S ribosomal protein L2 OS=Bordetella pertussis G... [more]
RL2_BORPA6.306e-1134.7650S ribosomal protein L2 OS=Bordetella parapertuss... [more]
RL2_BORBR6.306e-1134.7650S ribosomal protein L2 OS=Bordetella bronchisept... [more]
RL2_BART16.306e-1136.5050S ribosomal protein L2 OS=Bartonella tribocorum ... [more]
RL2_BARHE6.306e-1134.1550S ribosomal protein L2 OS=Bartonella henselae GN... [more]
RL2_THEM48.236e-1137.7250S ribosomal protein L2 OS=Thermosipho melanesien... [more]
RL2_SILST8.236e-1136.0350S ribosomal protein L2 OS=Silicibacter sp. (stra... [more]
RL2_RHOP58.236e-1132.9350S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_PSEAE8.236e-1135.3450S ribosomal protein L2 OS=Pseudomonas aeruginosa... [more]
RL2_PSEAB8.236e-1135.3450S ribosomal protein L2 OS=Pseudomonas aeruginosa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-007-H12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711460 ID=EY711460; Name=EY711460; organism=Citrus sinensis; type=EST; length=962bp
GTACCCTTTGTCACTGTTCCGGAATTCTTTCGCTCGACCCACGCGTCCGA
TTGTTTCAATCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGG
AGGACGGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCT
AAGCAGTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATG
TCTCCTACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAG
TCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGG
GAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGG
ATTCCTATATATCCACTCATGTGGTACTTCATTATATGATATTGTGGTAC
TTCATTATATGATATATATAAGATCCATCTGTATAGATATCATCATCTAC
ATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACGGTTTGGGAAGGGG
TTTTGATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCTTACGC
ACGGCCATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAGC
TAGAGCAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGACATCGG
CCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGC
TCAGCAACAGTCCGGACAAGTGGGGAATGGTGGGGGCGAACCAGAATAGT
TTGGGTAGAGCCCGATCTAAATGGTGGCTAGGAAAGCGTCCTGTAGTAAG
AGGAGTAGTTATGACCCTGTAAACCACCCCATTGGGGTGGGGAAGAAAGG
CTCCAAATGGTAAAAAAAGACCGGCAACCCCTTGGGTTATCCTGCCCTTG
GAAGACGAGTTGAAAAGGAATAATATAGTGGAAATTTGATTCCTTCCCGC
CGAACTAATAGG
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