EY711354

Overview
NameEY711354
Unique NameEY711354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711354 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.246e-12
Identity = 23/58 (39.66%), Postives = 34/58 (58.62%), Query Frame = 2
Query:  401 EFDRYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE 574
            E+      IWDVGG+  +R  W++Y+  T  +V+VVDSS   R+ +   EL  LL E+
Sbjct:  444 EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEK 501          

HSP 2 Score: 40.4318 bits (93), Expect = 4.246e-12
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  175 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 282
            GLD +GKTTI+ K+  ++     PT+GFN++T+ Y+
Sbjct:  411 GLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK 446          
BLAST of EY711354 vs. ExPASy Swiss-Prot
Match: ARL11_HUMAN (ADP-ribosylation factor-like protein 11 OS=Homo sapiens GN=ARL11 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.115e-11
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  416 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKE 571
            +L +WDVGGQ  +R+ W++Y E TD LV+V+DS+D  RL +   EL  +L +
Sbjct:   58 SLTLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLND 109          

HSP 2 Score: 35.4242 bits (80), Expect = 2.115e-11
Identity = 21/61 (34.43%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  580 LTNMFQCQKLSGASLLILXNKQDINGALTPTEIAKVLDXGAMDKTRHWKIVGCSAYTSEGL 762
            LT +     ++G   L+L NKQ+   AL   +I   L      +   W++ GCSA T EGL
Sbjct:  103 LTEVLNDPNMAGVPFLVLANKQEAPDALPLLKIRNRLSLERF-QDHCWELRGCSALTGEGL 162          
BLAST of EY711354 vs. ExPASy Swiss-Prot
Match: ARD1_RAT (GTP-binding protein ARD-1 (Fragment) OS=Rattus norvegicus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 3.428e-11
Identity = 22/58 (37.93%), Postives = 33/58 (56.90%), Query Frame = 2
Query:  401 EFDRYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE 574
            E+      IWDVG +  +R  W++Y+  T  +V+VVDSS   R+ +   EL  LL E+
Sbjct:  424 EYKNLKFTIWDVGEKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEK 481          

HSP 2 Score: 40.4318 bits (93), Expect = 3.428e-11
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  175 GLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYQ 282
            GLD +GKTTI+ K+  ++     PT+GFN++T+ Y+
Sbjct:  391 GLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK 426          
BLAST of EY711354 vs. ExPASy Swiss-Prot
Match: ARL11_MOUSE (ADP-ribosylation factor-like protein 11 OS=Mus musculus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 4.656e-11
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  416 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKE 571
            +L +WD+GGQ  +R+ W++Y E  D LV+V+DS+D  RL +   EL  +L++
Sbjct:   58 SLTLWDIGGQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLED 109          

HSP 2 Score: 36.5798 bits (83), Expect = 4.656e-11
Identity = 21/61 (34.43%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  580 LTNMFQCQKLSGASLLILXNKQDINGALTPTEIAKVLDXGAMDKTRHWKIVGCSAYTSEGL 762
            L  + +   ++G   L+L NKQ+  GAL   EI   L      K   W++  CSA T +GL
Sbjct:  103 LKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLGLEGFQK-HCWELRACSALTGQGL 162          
The following BLAST results are available for this feature:
BLAST of EY711354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
ARD1_HUMAN4.246e-1239.66GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]
ARL11_HUMAN2.115e-1146.15ADP-ribosylation factor-like protein 11 OS=Homo sa... [more]
ARD1_RAT3.428e-1137.93GTP-binding protein ARD-1 (Fragment) OS=Rattus nor... [more]
ARL11_MOUSE4.656e-1142.31ADP-ribosylation factor-like protein 11 OS=Mus mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-G04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711354 ID=EY711354; Name=EY711354; organism=Citrus sinensis; type=EST; length=918bp
TTGCCGACCCACGCGTCCGCCCACGCGTCCTGAAAAAAGAGAAGGAAATG
CGCATTCTTATGGTGTATGTAATTAACTATTTTTCTTTTGTTTGTTTACA
ATCGTGTTTATAATTGTGCGGAACTGTTAATTATTTATTATTTGTTAATT
ATTTGTTTTGTTTTGTTTTGAAGGGGTCTTGATAATTCTGGGAAGACCAC
TATTGTTTTGAAGATAAACGGAGAAGATACTAGCGTTATCAGTCCTACAC
TTGGATTCAATATCAAAACCATTACTTACCAAAAGTAAGAACTTTTTATT
CCATGATTTAGGATCATTTTATGTCAGCCAAAAATGAGAATTTGAAGTCT
TTAAACGCTGTTTAGTTTTTAGCGCGAACATTTTAGTTCCGATATTTTTT
GAATTTGACAGGTACACTTTAAACATATGGGATGTAGGAGGCCAAAGGAC
TATAAGATCATATTGGAGGAACTACTTTGAGCAAACTGATGGTTTGGTGT
GGGTGGTTGATAGTTCCGATCTTAGAAGACTGGATGATTGCAAAATGGAA
CTAGACAATCTTTTAAAGGAAGAGGGAGTCTGACCAACATGTTTCAATGT
CAGAAGCTATCAGGGGCATCCTTACTGATTCTAGNCAATAAGCAGGACAT
CAATGGTGCTCTTACCCCNACAGAGATTGCTAAAGTTCTTGACTTNGGAG
CCATGGACAAAACTCGACACTGGAAAATTGTGGGTTGCAGTGCCTACACA
AGTGAGGGACTGCTAGANGGATTTGATTGNNTAGTTCANGACATGCCTCC
CGGATCTACCTCTTGACTACCCGTTGTTGTACAAGAAAATTTTCTAATTT
TTCCTTGAATGTGAAAAAAAAAGTGTGTTTATTGGACAAACATTGTGAAT
GTATCCCATGTGATTGAT
back to top