EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_PELPD (CinA-like protein OS=Pelobacter propionicus (strain DSM 2379) GN=Ppro_0627 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 41/100 (41.00%), Postives = 57/100 (57.00%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVR 590
            S  F  G V Y    K+R+  V   L    GAVS EV EAM +G +  + +   +AV+G+AGPDGG+ +KPVGTV+++    D   TE   F   RD++R
Sbjct:  297 SGYFLEGAVTYGNVAKSRRLGVAAELIDGKGAVSSEVAEAMAKGIRASAGSDLGLAVTGIAGPDGGTEEKPVGTVYISLATADGCRTERFLFGRGRDDIR 396          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCVP (CinA-like protein OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_2999 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = -2
Query:  282 GYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGV-GDEVTTELEHFPGNRDEVRRQT 572
            G V YS   KT    V   L  + GAVS  V EAM  GA ++  A  AVA++G+AGP GG+P KPVGTV  +  + G    T     PGNR ++R ++
Sbjct:  309 GVVAYSNAAKTELLGVDAGLIERHGAVSEPVAEAMAAGALQRFGADTAVAITGIAGPGGGTPTKPVGTVCFSVALAGGASVTRATRLPGNRSDIRERS 406          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_THEPX (Putative competence-damage inducible protein OS=Thermoanaerobacter sp. (strain X514) GN=cinA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = -2
Query:  279 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 599
            S  S +F  G V YS   K     VRK+     GAVS E  + M    ++ + A F ++ +G+AGP GG+P+KPVG V++ +   +EV  +     G+R ++R +TV
Sbjct:  290 SGASKVFNLGVVSYSNEAKENILGVRKSTLESYGAVSYETAKEMAENVRKLANADFGLSTTGIAGPTGGTPEKPVGLVYVGFATNEEVYVKKLMLSGDRSKIRTRTV 396          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_PELCD (CinA-like protein OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_2403 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 38/100 (38.00%), Postives = 58/100 (58.00%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVR 590
            S   E G V YS   K     V + +  + GAVS+   +AM +G ++ +     +A++G+AGPDGG+PDKPVGTV+LA     E   +   F G+R+++R
Sbjct:  294 SRFLERGGVTYSNAAKQDWLQVSEDILNQEGAVSKACAQAMAQGIRQAAGTDLGLAITGIAGPDGGTPDKPVGTVFLALSTTGEERVQGYRFSGDREQIR 393          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEU2 (Protein recA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSETO (Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSESM (Protein recA OS=Pseudomonas syringae pv. tomato GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEFS (Protein recA OS=Pseudomonas fluorescens (strain SBW25) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEFL (Protein recA OS=Pseudomonas fluorescens GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEF5 (Protein recA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=recA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 37/45 (82.22%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG
Sbjct:    1 MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 45          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CINAL_PELPD6.948e-1341.00CinA-like protein OS=Pelobacter propionicus (strai... [more]
CINAL_MYCVP9.074e-1342.86CinA-like protein OS=Mycobacterium vanbaalenii (st... [more]
CINA_THEPX1.185e-1235.51Putative competence-damage inducible protein OS=Th... [more]
CINAL_PELCD1.185e-1238.00CinA-like protein OS=Pelobacter carbinolicus (stra... [more]
RECA_PSEU21.198e-1282.22Protein recA OS=Pseudomonas syringae pv. syringae ... [more]
RECA_PSETO1.198e-1282.22Protein recA OS=Pseudomonas tolaasii GN=recA PE=3 ... [more]
RECA_PSESM1.198e-1282.22Protein recA OS=Pseudomonas syringae pv. tomato GN... [more]
RECA_PSEFS1.198e-1282.22Protein recA OS=Pseudomonas fluorescens (strain SB... [more]
RECA_PSEFL1.198e-1282.22Protein recA OS=Pseudomonas fluorescens GN=recA PE... [more]
RECA_PSEF51.198e-1282.22Protein recA OS=Pseudomonas fluorescens (strain Pf... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
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