EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCTA (CinA-like protein OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_1912 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  282 VRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-EVTTELEHFPGNRDEVRRQT 566
            V YS   K +   V  AL    GAVS  V +AM  GA +   A  A A++G+AGP GG+P+KPVGTV     + D   TT     PGNR ++R ++
Sbjct:  316 VAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCBT (CinA-like protein OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=JTY_1924 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  282 VRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-EVTTELEHFPGNRDEVRRQT 566
            V YS   K +   V  AL    GAVS  V +AM  GA +   A  A A++G+AGP GG+P+KPVGTV     + D   TT     PGNR ++R ++
Sbjct:  316 VAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCBP (CinA-like protein OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_1940 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  282 VRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-EVTTELEHFPGNRDEVRRQT 566
            V YS   K +   V  AL    GAVS  V +AM  GA +   A  A A++G+AGP GG+P+KPVGTV     + D   TT     PGNR ++R ++
Sbjct:  316 VAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCBO (CinA-like protein OS=Mycobacterium bovis GN=cinA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.235e-11
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = -2
Query:  282 VRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-EVTTELEHFPGNRDEVRRQT 566
            V YS   K +   V  AL    GAVS  V +AM  GA +   A  A A++G+AGP GG+P+KPVGTV     + D   TT     PGNR ++R ++
Sbjct:  316 VAYSNEAKAQLLGVDPALIEAHGAVSEPVAQAMAAGALQGFGADTATAITGIAGPSGGTPEKPVGTVCFTVLLDDGRTTTRTVRLPGNRSDIRERS 411          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_AZOVI (Protein recA OS=Azotobacter vinelandii GN=recA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MD+N        LGQIE+QFGKGAVMRMGDH+RQAIPAISTGSLG
Sbjct:    1 MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_AZOVD (Protein recA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=recA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 34/45 (75.56%), Postives = 37/45 (82.22%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MD+N        LGQIE+QFGKGAVMRMGDH+RQAIPAISTGSLG
Sbjct:    1 MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLOAB (Putative competence-damage inducible protein OS=Clostridium acetobutylicum GN=cinA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 37/104 (35.58%), Postives = 54/104 (51.92%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S +F  G V YS   K  +  V+K      GAVS E    M +G  + +     V+ +GVAGP GG+ +KPVG V++   +  +V T   + PG+R  VR + V
Sbjct:  294 SEVFMEGAVTYSNEAKMNRLGVKKETLESYGAVSSETAAEMAKGIAKTAGTNIGVSTTGVAGPGGGTKEKPVGLVYVGLCINGKVKTRKLNMPGDRQTVRNRVV 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_FERNB (CinA-like protein OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1586 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = -2
Query:  282 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQT 590
            S +F+   V YS   K     V K    K GAVS E +  M +GA++   + F+VAVSG+AGP GGS  KPVGTV +A    + + +   +  G+R  +R+++
Sbjct:  289 SSVFKGSVVAYSNEAKIEILGVSKETIEKFGAVSEECVIEMAQGAKKIFNSNFSVAVSGIAGPSGGSEKKPVGTVCIAVCSPNGINSATYNLRGDRQMIRKRS 391          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_PROM2 (CinA-like protein OS=Prochlorococcus marinus (strain MIT 9215) GN=P9215_02811 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = -2
Query:  279 SRKSXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLA-WGVGDEVTTELEHFPGNRDEVRRQTV 599
            S  S +F+   V YS   K    N+ +    K GAVS EV EAM    + +  A +A+ VSG+AGP+GGS +KPVG V+++  G  + +T   + +   R+ +  QT+
Sbjct:  299 SGSSQVFQGSIVSYSNELKNSLLNISEDNLKKYGAVSEEVCEAMAINIKNRLGADWAIGVSGIAGPNGGSQEKPVGLVYISIAGPNNHITNIKKKYNSTRNRIEIQTL 406          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_MYCA1 (CinA-like protein OS=Mycobacterium avium (strain 104) GN=MAV_2800 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = -2
Query:  282 GYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGD-----EVTTELEHFPGNRDEVRRQT 572
            G V YS   K     V  AL    GAVS  V +AM  GA+++  A  AVA++G+AGP GG+ +KPVGTV  +  VG         T     PGNR ++R ++
Sbjct:  318 GVVAYSNEAKAELLGVDPALIETHGAVSEPVAQAMAAGARQRFAADTAVAITGIAGPGGGTEEKPVGTVCFSVQVGPPGATARSDTRTLRLPGNRLDIRERS 419          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CINAL_MYCTA2.235e-1141.67CinA-like protein OS=Mycobacterium tuberculosis (s... [more]
CINAL_MYCBT2.235e-1141.67CinA-like protein OS=Mycobacterium bovis (strain B... [more]
CINAL_MYCBP2.235e-1141.67CinA-like protein OS=Mycobacterium bovis (strain B... [more]
CINAL_MYCBO2.235e-1141.67CinA-like protein OS=Mycobacterium bovis GN=cinA P... [more]
RECA_AZOVI2.259e-1175.56Protein recA OS=Azotobacter vinelandii GN=recA PE=... [more]
RECA_AZOVD2.259e-1175.56Protein recA OS=Azotobacter vinelandii (strain DJ ... [more]
CINA_CLOAB2.919e-1135.58Putative competence-damage inducible protein OS=Cl... [more]
CINAL_FERNB2.919e-1137.86CinA-like protein OS=Fervidobacterium nodosum (str... [more]
CINAL_PROM23.812e-1136.11CinA-like protein OS=Prochlorococcus marinus (stra... [more]
CINAL_MYCA13.812e-1140.20CinA-like protein OS=Mycobacterium avium (strain 1... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
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