EY711324

Overview
NameEY711324
Unique NameEY711324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_DESPS (CinA-like protein OS=Desulfotalea psychrophila GN=DP2957 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.812e-11
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVR 590
            S  F  G   Y    KT   +V + L  K GAVS EV EAM  G  EK+ A   ++V+G+AGP GG+ +KPVGTV++A             F G+R+++R
Sbjct:  295 SRYFLGGVTSYHNSMKTAFLDVPERLIEKEGAVSPEVAEAMAYGILEKTGADVTLSVTGIAGPGGGTLEKPVGTVYIAASTPHGDWVNAFQFKGSREQIR 394          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLOBL (Putative competence-damage inducible protein OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=cinA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S +F  G + YS   K  + NV+K    K  AVS+EV   M  G  + S     ++ +GVAGP GG+ DKP+G V++   +  +   +  ++ GNR  +R  TV
Sbjct:  294 SSVFLEGAITYSNESKINRLNVKKETLEKYTAVSKEVALEMAEGIAKSSGTNIGISTTGVAGPGGGTYDKPIGLVYIGLYINGKTFVKELNYSGNRQFIRNITV 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLOBK (Putative competence-damage inducible protein OS=Clostridium botulinum (strain Okra / Type B1) GN=cinA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 36/104 (34.62%), Postives = 55/104 (52.88%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S +F  G + YS   K  + NV+K    K  AVS+EV   M  G  + S     ++ +GVAGP GG+ DKP+G V++   +  +   +  ++ GNR  +R  TV
Sbjct:  294 SSVFLEGAITYSNESKINRLNVKKETLEKYTAVSKEVALEMAEGIAKSSGTNIGISTTGVAGPGGGTYDKPIGLVYIGLYINGKTFVKELNYSGNRQFIRNITV 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLOB6 (Putative competence-damage inducible protein OS=Clostridium botulinum (strain 657 / Type Ba4) GN=cinA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = -2
Query:  279 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 590
            S +F  G + YS   K  + NV+K    K  AVS+EV   M  G  + +     ++ +GVAGP GG+ DKP+G +++   +  +   E  ++ GNR  +R  TV
Sbjct:  294 SSVFLEGAITYSNESKINRLNVKKETLEKYTAVSKEVALEMAEGIAKSAGTNIGISTTGVAGPGGGTYDKPIGLIYIGLYINGKTFVEELNYSGNRQFIRNITV 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_LEPBP (CinA-like protein OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=LEPBI_I2088 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAW-GVGDEVTTELEHFPGNRDEVR 590
            S  F  G++ YS   K+    + K      GAVS EV  AMV G   K+   F V+++G+AGP+GGS +KPVGTV +       ++      FPGNR+ +R
Sbjct:  297 SAYFMGGFLTYSNEMKSNLLGIPKETIETFGAVSDEVAFAMVDGLCLKTGTDFGVSITGIAGPEGGSEEKPVGTVCIGLKEPNGKIKVHRYLFPGNRESIR 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_LEPBA (CinA-like protein OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=LBF_2034 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 39/101 (38.61%), Postives = 55/101 (54.46%), Query Frame = -2
Query:  291 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAW-GVGDEVTTELEHFPGNRDEVR 590
            S  F  G++ YS   K+    + K      GAVS EV  AMV G   K+   F V+++G+AGP+GGS +KPVGTV +       ++      FPGNR+ +R
Sbjct:  297 SAYFMGGFLTYSNEMKSNLLGIPKETIETFGAVSDEVAFAMVDGLCLKTGTDFGVSITGIAGPEGGSEEKPVGTVCIGLKEPNGKIKVHRYLFPGNRESIR 397          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_CHLPB (CinA-like protein OS=Chlorobium phaeobacteroides (strain BS1) GN=Cphamn1_0300 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 40/105 (38.10%), Postives = 54/105 (51.43%), Query Frame = -2
Query:  285 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGV---GDEVTTELEHFPGNRDEVRRQ 590
            S  FE G+V YS   K +   VR+      GAVS EV   M  G  ++S    AV+ +G+AGPDGG+  KP G V L   +   G+ V TE E F    D ++ +
Sbjct:  299 SGYFEQGFVVYSNASKEKNLGVRRETIETCGAVSEEVAAEMAEGCLQRSGVHMAVSSTGIAGPDGGTELKPAGMVCLGLAIRKEGEGVRTETETFVTRGDRLQNK 403          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINAL_BACFN (CinA-like protein OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=BF2511 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 37/87 (42.53%), Postives = 47/87 (54.02%), Query Frame = -2
Query:  330 SXLFEAGYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTT 590
            S  F+   V Y+   KT    V      K GAVS E +  MV+GA +      AVA SG+AGP GG+ +KPVGTVW+A     E+ T
Sbjct:  295 SEYFKGSIVAYANEVKTELLGVSMETLEKRGAVSEETVIEMVKGAMKALKTDCAVATSGIAGPSGGTEEKPVGTVWIAAAYKSEICT 381          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: RECA_PSEPW (Protein recA OS=Pseudomonas putida (strain W619) GN=recA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.033e-11
Identity = 34/45 (75.56%), Postives = 35/45 (77.78%), Query Frame = -1
Query:    1 MDDNXXXXXXXXLGQIERQFGKGAVMRMGDHDRQAIPAISTGSLG 135
            MDDN        LGQIERQFGKGAVMRMGDH+R  IPAISTGSLG
Sbjct:    1 MDDNKKRALAAALGQIERQFGKGAVMRMGDHERTGIPAISTGSLG 45          
BLAST of EY711324 vs. ExPASy Swiss-Prot
Match: CINA_CLOTE (Putative competence-damage inducible protein OS=Clostridium tetani GN=cinA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 35/98 (35.71%), Postives = 53/98 (54.08%), Query Frame = -2
Query:  279 GYVRYSIRKKTRQWNVRKALFPKVGAVSREVLEAMVRGAQEKSLARFAVAVSGVAGPDGGSPDKPVGTVWLAWGVGDEVTTELEHFPGNRDEVRRQTV 572
            G V YS   K  +  V+K    K GAVS E    M +G    S A   ++ +G+AGP GG+ +KPVG V++ + +  +   +   FPG+R  +R +TV
Sbjct:  300 GIVSYSNNSKMNRIGVKKETLNKFGAVSEETAIEMAKGVANSSGADIGISTTGIAGPSGGTYEKPVGLVYIGYYIKGKSFAKKFIFPGDRQSMRNKTV 397          
The following BLAST results are available for this feature:
BLAST of EY711324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
CINAL_DESPS3.812e-1140.00CinA-like protein OS=Desulfotalea psychrophila GN=... [more]
CINA_CLOBL4.979e-1134.62Putative competence-damage inducible protein OS=Cl... [more]
CINA_CLOBK4.979e-1134.62Putative competence-damage inducible protein OS=Cl... [more]
CINA_CLOB64.979e-1133.65Putative competence-damage inducible protein OS=Cl... [more]
CINAL_LEPBP4.979e-1138.61CinA-like protein OS=Leptospira biflexa serovar Pa... [more]
CINAL_LEPBA4.979e-1138.61CinA-like protein OS=Leptospira biflexa serovar Pa... [more]
CINAL_CHLPB4.979e-1138.10CinA-like protein OS=Chlorobium phaeobacteroides (... [more]
CINAL_BACFN4.979e-1142.53CinA-like protein OS=Bacteroides fragilis (strain ... [more]
RECA_PSEPW5.033e-1175.56Protein recA OS=Pseudomonas putida (strain W619) G... [more]
CINA_CLOTE6.503e-1135.71Putative competence-damage inducible protein OS=Cl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-D09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711324 ID=EY711324; Name=EY711324; organism=Citrus sinensis; type=EST; length=615bp
ACCCAGAGAGCCAGTAGAGATAGCCGGGATCGCCTGACGGTCGTGATCGC
CCATACGCATTACGGCACCCTTGCCGAATTGACGTTCGATCTGACCCAGG
GCCGCAGCCAAGGCTTTCTTCTTGTTGTCGTCCATTAAAGTCCTCACGTA
ATCAATAAGGCCTGGCGGCCAACACCTGTATAAGTAGACAGTATTGTTCC
ACAAAGATCCGTGATCGCCTACCCCTGTTTTTCTATTTCTGCTGCAGCTC
GTCGCAACAAGCCCTCTAGCGCGGCCTTTACCGTTTGTCGGCGGACCTCG
TCACGGTTCCCAGGGAAGTGTTCAAGCTCGGTGGTGACCTCATCGCCCAC
GCCCCAGGCCAGCCATACGGTGCCCACCGGTTTGTCCGGCGAACCGCCAT
CGGGGCCGGCCACACCGCTGACCGCTACGGCAAAACGCGCCAGGCTTTTC
TCCTGGGCACCTCGCACCATCGCCTCCAACACTTCGCGACTGACAGCCCC
GACTTTGGGGAACAGCGCTTTCCGGACATTCCACTGCCGGGTCTTCTTGC
GGATGGAATACCTGACATAGCCCGCCTCGAACAGGNCAGACTTCCGGGAA
TCGCGGGATGGCCTG
back to top