EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNP6 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.136e-35
Identity = 91/198 (45.96%), Postives = 119/198 (60.10%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++GTKLGM   F+             + G   +TQ+KT ATDGY+A+QIG+  VR+K+L+KPELGHL K+G  P+RHL E+R+ S DG E GQ L  +  F  G  VDV G TIG+GF G  KRH F  G M+HGSK+HR  GS GA  + G   PG+  A ++G     IR   + ++     L   K +VPGKP
Sbjct:    3 IGILGTKLGMTQIFDESGKAVPVTV--IQAGPCPITQIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNE7 (50S ribosomal protein L3 OS=Synechococcus elongatus (strain PCC 7942) GN=rplC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.136e-35
Identity = 91/198 (45.96%), Postives = 119/198 (60.10%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++GTKLGM   F+             + G   +TQ+KT ATDGY+A+QIG+  VR+K+L+KPELGHL K+G  P+RHL E+R+ S DG E GQ L  +  F  G  VDV G TIG+GF G  KRH F  G M+HGSK+HR  GS GA  + G   PG+  A ++G     IR   + ++     L   K +VPGKP
Sbjct:    3 IGILGTKLGMTQIFDESGKAVPVTV--IQAGPCPITQIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CYAP8 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 8801) GN=rplC PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.136e-35
Identity = 88/200 (44.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            +G++GTKLGM   F+                  VTQVKT  TDGY A+Q+GY  V++K LTK E+GHL+K    P+RHL+E+RL     ++ G  +   +IFN GDLVDVSG ++G+GF G  KRHNF+ G MTHGSK+HR  GS GA  + G   PG+  A + G     IR   + ++     L   K A+PGKP  L
Sbjct:    3 VGILGTKLGMTQIFDQETGMAIPVTVVQAGPCTVTQVKTPDTDGYTAIQVGYHEVKEKALTKAEIGHLKKIDAPPLRHLKEYRLDDSSQYQLGDAIK-ADIFNPGDLVDVSGKSMGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGATQVTIRHLTVVRVDSDRNLILVKGAIPGKPGTL 201          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_CYAPA (50S ribosomal protein L3, cyanelle OS=Cyanophora paradoxa GN=rpl3 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.798e-34
Identity = 88/201 (43.78%), Postives = 120/201 (59.70%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNI-VTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            IG++GTKLGM   F+             + G   +TQ+KT ATDGY+A+Q+GYR  ++K LTK +LGHLQK+    +R LQEF ++S D  E  +K    E+FN+ D+V++ G +IG+GF G  KRHNF  G M+HGSK+HR  GSIGA  + G   PG   A + G     IR  ++ K+     L   K +VPGKP  L
Sbjct:    3 IGILGTKLGMTQIFDEAGNAIPVTI--IQAGPCPITQIKTTATDGYNAIQVGYRETKEKNLTKAQLGHLQKTNNSALRVLQEFSIESSDSIEV-EKPITVELFNDNDIVNIQGYSIGRGFSGYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKVDSERSLLIVKGSVPGKPGGL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_CYAP4 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplC PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.773e-34
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            +G++GTKLGM   F+                 I TQ+KT+ TDGY A+Q+ +  VR K L+K ELGHL KS   PMRHL E+R   +D F+ GQ L   ++F+ G +VDV+GT+IG+GF G  KRHNF+ G M HGSK+HR  GS GA  + G   PG+  A + G     IR+  + ++     L   K AVPGKP
Sbjct:    3 VGILGTKLGMTQIFDQERRAIPVTVVQAGPCPI-TQIKTKQTDGYAAIQVAFGEVRAKSLSKAELGHLAKSNTAPMRHLHEYRTGEVDQFQVGQVLK-ADLFSAGQVVDVTGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQLGSARTTIRQLTIVRVDPERNLVLIKGAVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_ODOSI (50S ribosomal protein L3, chloroplastic OS=Odontella sinensis GN=rpl3 PE=3 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.234e-34
Identity = 84/204 (41.18%), Postives = 123/204 (60.29%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG-AEHSGPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKPENLCV*H 888
            +G++G K+GM   F+                 ++TQVKT+  DGY+A+QIGY  V +K LT+PELGHLQKS + P+++L+EFR+ + + F+ GQ +  E + + G  +DV+G + GKGF G  KRHNF  G MTHGSK+HR  GSIG     G  +PG++ A + G    K +K ++ ++     +   K +VPGKP NL   H
Sbjct:    3 LGLLGNKIGMTQIFDESGNIIPVTILKVGPC-VITQVKTDLNDGYNAIQIGYGTVSNKSLTQPELGHLQKSNIQPLKYLKEFRVNNPEEFKVGQVVNVESL-STGQFIDVTGKSSGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKVTKTKKLKIIQVNGNENILVVKGSVPGKPGNLVTIH 204          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_PORYE (50S ribosomal protein L3, chloroplastic OS=Porphyra yezoensis GN=rpl3 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.369e-33
Identity = 81/200 (40.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PFLCND----KRAVPGKP 867
            +G++GTK+GM  +F+                 ++TQ+K  +TDGY+A+Q+GY++V ++KL KP LGHL+KS   P+++L+E+ ++S D FE  Q L+  ++F  G  ++VS  ++GKGF G  KRH+F  G M+HGSK+HRQ GSIGA  + G   PG+  A + G     I+  Q+  +      ND    K AVPGKP
Sbjct:    3 VGILGTKVGMTQFFDEAGLSIPVTVIQVGPC-VITQIKAVSTDGYNAIQVGYKQVAEQKLNKPLLGHLKKSQAPPLKYLREYEMKSTDDFEVSQILS-TDLFQVGQKINVSSRSVGKGFSGYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQLGNKKVTIKNLQIVSI---NSENDLLIVKGAVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_PHATR (50S ribosomal protein L3, chloroplastic OS=Phaeodactylum tricornutum GN=rpl3 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.369e-33
Identity = 83/200 (41.50%), Postives = 119/200 (59.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG-AEHSGPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKPENL 876
            +G++G K+GM   F+                 ++TQVK ++ DGYD++QIGY  V  K LT+PELGHLQKS + P+++L+EFR+     F+ GQ L  +  F  G LV++ G +IGKGF G  KRHNF  G MTHGSK+HR  GSIG     G  +PG++ + + G     I+K ++ ++     +   K +VPGKP NL
Sbjct:    3 VGLLGNKIGMTQIFDESGNIIPVTILKVGPC-VITQVKNQSKDGYDSIQIGYGNVLSKALTQPELGHLQKSNIQPLKYLKEFRINQETEFQIGQVLNVDS-FTPGQLVNIQGKSIGKGFSGLQKRHNFTRGPMTHGSKNHRAPGSIGMGTTPGRVLPGKKMSGQLGNKITTIKKLKIIQINSEENILVIKGSVPGKPGNL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_GLOVI (50S ribosomal protein L3 OS=Gloeobacter violaceus GN=rplC PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.094e-33
Identity = 81/175 (46.29%), Postives = 107/175 (61.14%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGL-IPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRK 801
            +G++G KLGM   F+                  VTQVK+EATDGY AVQ+G+   R+K LT+PE+GH +K+GL  P+RHL+EFRL     +  GQ++  + +F  G LVDV GT+IGKGF GG KRH+F  G M HGSK+HR  GSIGA  + G   PG+    + G     +RK
Sbjct:    3 LGILGRKLGMTQIFDEEGRAIPVTVVEAGPCP-VTQVKSEATDGYTAVQLGFGTAREKVLTRPEVGHCKKAGLEAPVRHLREFRLPDSSQYTPGQQITVD-LFAAGQLVDVVGTSIGKGFAGGQKRHHFGRGPMAHGSKNHRAPGSIGAGTTPGRVFPGKRMPGRMGNERVTVRK 175          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_GUITH (50S ribosomal protein L3, chloroplastic OS=Guillardia theta GN=rpl3 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.241e-33
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            IG++GTKLGM   F+                  VT +K++  D Y+A+QIGY++V  KKLTKP+LGHLQ + L P++HL+E+++ +   F   Q+L    IF  G +V VSG +IGKGF G +KRHNF  G MTHGSK+HR+ GSIG
Sbjct:    3 IGLLGTKLGMTQIFDDNGSAIPVTILKVGPC-YVTNLKSDTKDNYNAIQIGYQQVDAKKLTKPQLGHLQVNNLPPLKHLKEYKVDATHTFTIAQQLDV-SIFELGQIVSVSGVSIGKGFAGTVKRHNFTRGPMTHGSKNHREPGSIG 147          

HSP 2 Score: 29.6462 bits (65), Expect = 3.241e-33
Identity = 14/42 (33.33%), Postives = 27/42 (64.29%), Query Frame = 2
Query:  728 NTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            +TP +V++GKKM  R+GG    ++ L   + + D + +++KG
Sbjct:  150 STPAKVHKGKKMAGRLGGHQVTTKNLTVVHLDKDNNVLVLKG 191          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SYNP61.136e-3545.9650S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNE71.136e-3545.9650S ribosomal protein L3 OS=Synechococcus elongatu... [more]
RL3_CYAP81.136e-3544.0050S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RK3_CYAPA2.798e-3443.7850S ribosomal protein L3, cyanelle OS=Cyanophora p... [more]
RL3_CYAP44.773e-3444.1650S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RK3_ODOSI6.234e-3441.1850S ribosomal protein L3, chloroplastic OS=Odontel... [more]
RK3_PORYE2.369e-3340.5050S ribosomal protein L3, chloroplastic OS=Porphyr... [more]
RK3_PHATR2.369e-3341.5050S ribosomal protein L3, chloroplastic OS=Phaeoda... [more]
RL3_GLOVI3.094e-3346.2950S ribosomal protein L3 OS=Gloeobacter violaceus ... [more]
RK3_GUITH3.241e-3347.6250S ribosomal protein L3, chloroplastic OS=Guillar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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