EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNJB (50S ribosomal protein L3 OS=Synechococcus sp. GN=rplC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.896e-31
Identity = 76/178 (42.70%), Postives = 109/178 (61.24%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPM-RHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM 810
            +G++G K+GM   F                   VTQ+KT+ATDGY+A+Q+GY    +K LT+ + GHL K+G+  + RHL+EFR+   + ++ GQK+  E +F+ G LVDV+GT+IG+GF G  KRH+F  G M+HGSK+HR+ GSIGA  + G   PG   A + G      RK Q+
Sbjct:    3 LGILGRKVGMTQIFSPEGLAIPVTVVQAGPCT-VTQIKTQATDGYNAIQLGYLPTAEKHLTRAQRGHLTKAGVTELLRHLREFRVDQPEAYQLGQKITVE-MFSPGQLVDVAGTSIGRGFAGYQKRHHFGRGPMSHGSKNHRRPGSIGAGTTPGRVFPGMRMAGRLGGGRVTTRKLQL 178          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNPX (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH8102) GN=rplC PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.940e-31
Identity = 84/197 (42.64%), Postives = 109/197 (55.33%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG-AEHSGPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++G KLGM  +F+                 I TQ+K+  TDGY AVQIG+   R+K + KP  GHL K+G   +RHL+E+R+  +DGFE G  +   + F  G  VDVSG TIG+GF G  KRH F  G MTHGSK+HR+ GSIG     G   PG+  A + G      R   + K+     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQFFDEQGRAVPVTLIEAGPCRI-TQLKSSDTDGYAAVQIGFGDTREKLINKPAKGHLNKTGETLLRHLREYRVDGLDGFELGGSITVGD-FEAGQKVDVSGDTIGRGFSGYQKRHGFSRGPMTHGSKNHREPGSIGPGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSERNLLVVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNSC (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9605) GN=rplC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.452e-31
Identity = 83/197 (42.13%), Postives = 110/197 (55.84%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKP 867
            IG++G KLGM  +F+                 I TQ+K + TDGY AVQIG+   R+K + KP  GHL KSG   +RHL+E+R+ S++G E G  +   + F  G  VDVSG T+G+GF G  KRH F  G MTHGSK+HR+ GS GA  + G   PG+  A + G      R   + K+     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQFFDEQGRAVPVTLIEAGPCRI-TQLKNDDTDGYSAVQIGFGETREKLINKPAQGHLNKSGEGLLRHLREYRVDSVEGLELGGAITVGD-FEAGQKVDVSGDTVGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTILKVDSEHNLLVVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNR3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain RCC307) GN=rplC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.426e-31
Identity = 83/197 (42.13%), Postives = 111/197 (56.35%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++G KLGM  +F+                 I TQVKT   DGY AVQ+G+  VR+K + +P  GHL+KSG   +RHL+E+R+ S DG E G  +   + F  G  VDVSG T+G+GF G  KRH F  G MTHGSK+HR+ GS GA  + G   PG+  A + G     ++   + K+     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQFFDDEGRAVPVTVIEAGPCRI-TQVKTPTNDGYSAVQVGFGDVREKLVNQPAKGHLKKSGEDLLRHLKEYRVDSTDGVELGSSVTV-DAFEPGQKVDVSGDTMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGTKTTVKGLVVLKVDSERNLLVVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNS9 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9902) GN=rplC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 83/197 (42.13%), Postives = 110/197 (55.84%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++G KLGM   F+                 I TQ+K + TDGY AVQIG+   R+K + KP  GHL KSG   +RHL+E+R+ ++DG E G  +   + F  G  VDVSG T+G+GF G  KRH F  G MTHGSK+HRQ GSIGA  + G   PG+  + + G      R   + ++     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQLFDEQGRAVPVTLIEAGPCRI-TQLKNDDTDGYAAVQIGFGETREKLINKPSKGHLTKSGEDLLRHLREYRVDNVDGLELGGSITVSD-FEAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKTTTRGLTILRIDSDRNLLVVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_RHDSA (50S ribosomal protein L3, chloroplastic OS=Rhodomonas salina GN=rpl3 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.437e-30
Identity = 80/205 (39.02%), Postives = 117/205 (57.07%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGN-IVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG-AEHSGPCIPGEEDAXKNGRXNXKIRKAQM*KL**PFLCND------KRAVPGKPENL 876
            G++GTKLGM   F+             + G  I+TQ+KT+ +D Y A+QIG+  V++  L KP LGHL+KS    ++HL+E+R++S++G E  QK+  +  F  G  V VSG TIGKGF G ++R++F  G MTHGSK+HR+ GSIG     G    G++ A + G     I+  ++       +  D      K AVPGK  N+
Sbjct:    4 GILGTKLGMTQIFDESGLAIPVTV--IKAGPCILTQIKTQESDSYQAIQIGFSEVKESSLNKPLLGHLKKSQAPALKHLKEYRVKSVEGLEVAQKITLDS-FEVGKTVSVSGKTIGKGFAGTVRRYSFTRGPMTHGSKNHREPGSIGQGSTPGKVHKGKKMAGRLGGKQSTIKNLEI-----VHVNTDNNILVVKGAVPGKKGNI 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNS3 (50S ribosomal protein L3 OS=Synechococcus sp. (strain CC9311) GN=rplC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.452e-30
Identity = 84/200 (42.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            IG++G KLGM  +F+                 I TQ+K+  TDGY AVQIG+  +R+K + KP  GHL KSG   +RHL E+R+  +DG + G  +   + F  G  VDVSG T+G+GF G  KRH F  G MTHGSK+HRQ GSIGA  + G   PG+  + + G      R   + K+     L   K +VPGKP +L
Sbjct:    3 IGILGKKLGMSQFFDEQGKAVPVTLIEAGPCRI-TQLKSSETDGYQAVQIGFGEIREKLINKPAKGHLAKSGEDLVRHLCEYRVDDLDGIQLGGAVTVGD-FAAGQKVDVSGDTMGRGFAGLQKRHGFSRGPMTHGSKNHRQPGSIGAGTTPGRIYPGKRMSGRYGGKKITTRGLTILKIDSERNLLVVKGSVPGKPGSL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROM1 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL1A) GN=rplC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.452e-30
Identity = 82/200 (41.00%), Postives = 115/200 (57.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876
            +G++G KLGM   F+                 I TQ+K+  TDGY AVQIG++ +R+K + KP  GHL KSG   +RHL+E+R+++   FE G  +  ++ F +G  VDVSG T+G+GF G  KRH F  G M+HGSK+HR  GSIGA  + G   PG+  A + G      R  ++ K+     L   K +VPGKP +L
Sbjct:    3 LGILGKKLGMSQLFDDQGRAVPVTLIEAGPCRI-TQLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROMT (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain NATL2A) GN=rplC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 81/200 (40.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876
            +G++G KLGM   F+                 I TQ+K+  TDGY AVQIG++ +R+K + KP  GHL KSG   +RHL+E+R+++   FE G  +  ++ F +G  VD+SG T+G+GF G  KRH F  G M+HGSK+HR  GSIGA  + G   PG+  A + G      R  ++ K+     L   K +VPGKP +L
Sbjct:    3 LGILGKKLGMSQLFDDQGRAVPVTLIEAGPCRI-TQLKSADTDGYAAVQIGFQLIREKLINKPSKGHLAKSGNDLLRHLREYRVENSSEFELGASITVDD-FEKGQKVDISGDTMGRGFAGYQKRHGFSRGPMSHGSKNHRLPGSIGAGTTPGRVYPGKRMAGRMGGKKVTTRALEILKIDTNHNLLVVKGSVPGKPGSL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_ALKMQ (50S ribosomal protein L3 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.202e-30
Identity = 81/205 (39.51%), Postives = 112/205 (54.63%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAE------HSGPCIPGEEDAXKNGRXNXKIRKAQM*KL**PFLCNDKRAVPGKPENLCV 882
            G+MG K+GM   F               E N+VTQ+K++ TDGY++VQ+GY   + K   KP  GH +K+G  P R ++EFR+ S +GF AGQ+L   ++F  GD VDV+G + GKGFQG IKRH    G M HGS+ HR+ GS+GA         G  +PG     +    N +I +  + K     L   K AVPG  + + V
Sbjct:    3 GLMGRKVGMTQIFNEDGIVTPVTVIEVAE-NVVTQIKSDETDGYNSVQVGYGEKKIKNTIKPLQGHFEKAGTTPKRTMKEFRVDSTEGFTAGQELK-ADLFQAGDKVDVTGISKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGASAYPGRVFKGKNLPGHMGNVQVTAQNLEIVRVDLEK----NLLLIKGAVPGPKKGVLV 201          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SYNJB2.896e-3142.7050S ribosomal protein L3 OS=Synechococcus sp. GN=r... [more]
RL3_SYNPX4.940e-3142.6450S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNSC6.452e-3142.1350S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNR38.426e-3142.1350S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_SYNS91.437e-3042.1350S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RK3_RHDSA1.437e-3039.0250S ribosomal protein L3, chloroplastic OS=Rhodomo... [more]
RL3_SYNS32.452e-3042.0050S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_PROM12.452e-3041.0050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_PROMT3.202e-3040.5050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_ALKMQ3.202e-3039.5150S ribosomal protein L3 OS=Alkaliphilus metallire... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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