EY711310
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNPW (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH7803) GN=rplC PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 4.182e-30 Identity = 84/197 (42.64%), Postives = 107/197 (54.31%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867 IG++G KLGM F+ I TQ+KT TDGY AVQIG+ RDK + KP GHL KSG +RHL E+R+ ++G E G + + F G VDVSG T+G+GF G KRH F G MTHGSK+HR+ GS GA + G PG+ A + G R + K+ L K +VPGKP Sbjct: 3 IGILGKKLGMSQLFDEQGKAVPVTLIEAGPCRI-TQLKTTETDGYSAVQIGFGETRDKLVNKPAKGHLAKSGEGVLRHLSEYRVDDVNGLELGGAVTVSD-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKTTTRGLTILKVDSDRNLLVVKGSVPGKP 197
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_PAUCH (50S ribosomal protein L3, organellar chromatophore OS=Paulinella chromatophora GN=rpl3 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30 Identity = 82/200 (41.00%), Postives = 112/200 (56.00%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876 IG++G KLGM +F+ I TQ+K+ TDGY AVQ+GY R K + KP GHL +SG + HL+E+R+++IDG + G + E+ F G VDVSG ++G+GF G KRH F G MTHGSK+HR+ GS GA + G PG+ A + G R + K+ L K +VPGKP +L Sbjct: 3 IGILGKKLGMSQFFDEEGKAVPVTLIEAGPCRI-TQLKSIDTDGYTAVQLGYGETRQKLVNKPSKGHLARSGEQLLSHLREYRVETIDGLKLGNSITVED-FKAGQKVDVSGDSMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKQITTRGLVIVKVDTGHNLLVVKGSVPGKPGSL 200
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BACP2 (50S ribosomal protein L3 OS=Bacillus pumilus (strain SAFR-032) GN=rplC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.866e-30 Identity = 65/146 (44.52%), Postives = 88/146 (60.27%), Query Frame = 1 Query: 286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723 G++G K+GM F N+V Q KT TDGY+A+QIG+ R+K KPE GH+ K+ P R ++E R +D +E GQ++ + IF GD+VDV+GT+ GKGFQG IKRH G MTHGS+ HR+ GS+G Sbjct: 4 GILGRKIGMTQVFAENGDLIPVTVVE-AAANVVLQKKTTDTDGYEAIQIGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGAELDAYEVGQEVKVD-IFANGDIVDVTGTSKGKGFQGAIKRHGQSRGPMTHGSRYHRRPGSMG 147 HSP 2 Score: 29.261 bits (64), Expect = 6.866e-30 Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2 Query: 707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850 ++GP+ P RV++GK +P RMGG + L + + + ++IKG Sbjct: 145 SMGPV---DPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKG 190
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLO (50S ribosomal protein L3 OS=Bifidobacterium longum GN=rplC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.973e-29 Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1 Query: 289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726 ++G KLGM ++ N+VT VKTE +DGY AVQ+GY + K+TKP GH K+G+ P RHL E R +D FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA Sbjct: 7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151 HSP 2 Score: 27.7202 bits (60), Expect = 1.973e-29 Identity = 14/41 (34.15%), Postives = 23/41 (56.10%), Query Frame = 2 Query: 731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850 TP R+ +GK+M RMG T ++ L + + + + IKG Sbjct: 154 TPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKG 194
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLD (50S ribosomal protein L3 OS=Bifidobacterium longum (strain DJO10A) GN=rplC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.973e-29 Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1 Query: 289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726 ++G KLGM ++ N+VT VKTE +DGY AVQ+GY + K+TKP GH K+G+ P RHL E R +D FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA Sbjct: 7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151 HSP 2 Score: 27.7202 bits (60), Expect = 1.973e-29 Identity = 14/41 (34.15%), Postives = 23/41 (56.10%), Query Frame = 2 Query: 731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850 TP R+ +GK+M RMG T ++ L + + + + IKG Sbjct: 154 TPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKG 194
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLI (50S ribosomal protein L3 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplC PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 2.569e-29 Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1 Query: 289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726 ++G KLGM ++ N+VT VKTE +DGY AVQ+GY + K+TKP GH K+G+ P RHL E R +D FEAGQ+LA ++F EG VDV+GTT GKGF G IKR F+ THGS K+ R+ GS+GA Sbjct: 7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151 HSP 2 Score: 27.335 bits (59), Expect = 2.569e-29 Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2 Query: 731 TPXRVYQGKKMPXRMGGTTXRSEKL 805 TP R+ +GK+M RMG T ++ L Sbjct: 154 TPSRILKGKRMAGRMGHVTATTQNL 178
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_LYSSC (50S ribosomal protein L3 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplC PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.570e-29 Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 1 Query: 286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723 G++G K+GM F N+V Q KT TDGY+A+Q+G+ R K KP+ GH+ K+ P R ++EFR +++ +E GQ++ E IF EGD++DV+G T GKGFQG IKRH G M HGS+ HR+ GS+G Sbjct: 4 GILGRKIGMTQVFAENGDLIPVTVIEATP-NVVLQKKTVETDGYEAIQVGFEDKRVKLSNKPQQGHVAKANTAPKRFIREFRNVNVEEYEVGQEVKVE-IFAEGDVIDVTGVTKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMG 147 HSP 2 Score: 30.0314 bits (66), Expect = 2.570e-29 Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2 Query: 707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLR-CKNCNDXSCVMIKG 850 ++GP+ P RV++ KK+P +MGG + L K D + +++KG Sbjct: 145 SMGPVA---PNRVFKQKKLPGQMGGNVVTIQNLEIVKVDTDRNLLLVKG 190
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROM4 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplC PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.711e-29 Identity = 84/200 (42.00%), Postives = 111/200 (55.50%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876 IG++G KLGM +F+ I TQ+K+ ATDGY AVQIGY R+K + KP GHL KSG +RHL E+R+ + +E G K+ F G VDVSG ++G+GF G KRH+F G M+HGSK+HRQ GS GA + G PG+ A + G R + K+ L K +VPGKP +L Sbjct: 3 IGILGKKLGMSQFFDDKGRSVPVTLIEAGPCRI-TQLKSLATDGYSAVQIGYGFTREKLVNKPFKGHLSKSGEGFLRHLHEYRVDDLGVYELGAKITVGN-FEAGQKVDVSGNSMGRGFAGYQKRHSFSRGPMSHGSKNHRQPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTIMKIDSDRNLLVVKGSVPGKPGSL 200
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_RENSM (50S ribosomal protein L3 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplC PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.343e-29 Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 1 Query: 286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIG 723 G++GTKLGM ++ + N+VTQ++ A DGY AVQIGY ++ +K+TKP GH +K+G+ P RH+ E R D + GQ+L+ EIF G VDV GT+ GKGF G +KRH F +HG+ K+HR+ GSIG Sbjct: 9 GILGTKLGMTQVWDENNKLVPVTVVQ-ADSNVVTQLRDAAKDGYTAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTNDSDAYSLGQELSV-EIFEAGQKVDVVGTSKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIG 153 HSP 2 Score: 28.4906 bits (62), Expect = 3.343e-29 Identity = 16/42 (38.10%), Postives = 24/42 (57.14%), Query Frame = 2 Query: 728 NTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850 +TP RV++G KM RMGG + L + + S ++IKG Sbjct: 156 STPSRVFKGLKMAGRMGGERHTTLNLTVHAIDAEKSLLLIKG 197
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROMM (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplC PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.540e-29 Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 1 Query: 283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKP 867 IG++G KLGM +F+ I TQ+KT DGY AVQIG+ R+K + KP GHL KSG + ++HL+E+R++ ++G E G + F G VDVSG T+G+GF G KRH F G M+HGSK+HR+ GS GA + G PG+ A + G R + K+ L K +VPGKP Sbjct: 3 IGILGKKLGMSQFFDDQGRAIPVTLIEAGPCRI-TQLKTSEIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKP 197 The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bpback to top |