EY711310

Overview
NameEY711310
Unique NameEY711310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_SYNPW (50S ribosomal protein L3 OS=Synechococcus sp. (strain WH7803) GN=rplC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.182e-30
Identity = 84/197 (42.64%), Postives = 107/197 (54.31%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKP 867
            IG++G KLGM   F+                 I TQ+KT  TDGY AVQIG+   RDK + KP  GHL KSG   +RHL E+R+  ++G E G  +   + F  G  VDVSG T+G+GF G  KRH F  G MTHGSK+HR+ GS GA  + G   PG+  A + G      R   + K+     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQLFDEQGKAVPVTLIEAGPCRI-TQLKTTETDGYSAVQIGFGETRDKLVNKPAKGHLAKSGEGVLRHLSEYRVDDVNGLELGGAVTVSD-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKTTTRGLTILKVDSDRNLLVVKGSVPGKP 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RK3_PAUCH (50S ribosomal protein L3, organellar chromatophore OS=Paulinella chromatophora GN=rpl3 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.462e-30
Identity = 82/200 (41.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**PF-LCNDKRAVPGKPENL 876
            IG++G KLGM  +F+                 I TQ+K+  TDGY AVQ+GY   R K + KP  GHL +SG   + HL+E+R+++IDG + G  +  E+ F  G  VDVSG ++G+GF G  KRH F  G MTHGSK+HR+ GS GA  + G   PG+  A + G      R   + K+     L   K +VPGKP +L
Sbjct:    3 IGILGKKLGMSQFFDEEGKAVPVTLIEAGPCRI-TQLKSIDTDGYTAVQLGYGETRQKLVNKPSKGHLARSGEQLLSHLREYRVETIDGLKLGNSITVED-FKAGQKVDVSGDSMGRGFSGYQKRHGFSRGPMTHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKQITTRGLVIVKVDTGHNLLVVKGSVPGKPGSL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BACP2 (50S ribosomal protein L3 OS=Bacillus pumilus (strain SAFR-032) GN=rplC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.866e-30
Identity = 65/146 (44.52%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V Q KT  TDGY+A+QIG+   R+K   KPE GH+ K+   P R ++E R   +D +E GQ++  + IF  GD+VDV+GT+ GKGFQG IKRH    G MTHGS+ HR+ GS+G
Sbjct:    4 GILGRKIGMTQVFAENGDLIPVTVVE-AAANVVLQKKTTDTDGYEAIQIGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGAELDAYEVGQEVKVD-IFANGDIVDVTGTSKGKGFQGAIKRHGQSRGPMTHGSRYHRRPGSMG 147          

HSP 2 Score: 29.261 bits (64), Expect = 6.866e-30
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            ++GP+    P RV++GK +P RMGG     + L     + + + ++IKG
Sbjct:  145 SMGPV---DPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLO (50S ribosomal protein L3 OS=Bifidobacterium longum GN=rplC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.973e-29
Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726
            ++G KLGM   ++                N+VT VKTE +DGY AVQ+GY  +   K+TKP  GH  K+G+ P RHL E R   +D FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA
Sbjct:    7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151          

HSP 2 Score: 27.7202 bits (60), Expect = 1.973e-29
Identity = 14/41 (34.15%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            TP R+ +GK+M  RMG  T  ++ L   + + +   + IKG
Sbjct:  154 TPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKG 194          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLD (50S ribosomal protein L3 OS=Bifidobacterium longum (strain DJO10A) GN=rplC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.973e-29
Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726
            ++G KLGM   ++                N+VT VKTE +DGY AVQ+GY  +   K+TKP  GH  K+G+ P RHL E R   +D FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA
Sbjct:    7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151          

HSP 2 Score: 27.7202 bits (60), Expect = 1.973e-29
Identity = 14/41 (34.15%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            TP R+ +GK+M  RMG  T  ++ L   + + +   + IKG
Sbjct:  154 TPSRILKGKRMAGRMGHVTATTQNLTVVSADVENGILAIKG 194          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_BIFLI (50S ribosomal protein L3 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.569e-29
Identity = 70/147 (47.62%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  289 VMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIGA 726
            ++G KLGM   ++                N+VT VKTE +DGY AVQ+GY  +   K+TKP  GH  K+G+ P RHL E R   +D FEAGQ+LA  ++F EG  VDV+GTT GKGF G IKR  F+    THGS K+ R+ GS+GA
Sbjct:    7 LLGKKLGMSQVWDENGFFVPVTLVDVST-NVVTAVKTEESDGYKAVQLGYGAIDPTKVTKPLAGHFAKAGVTPRRHLVEVRTDDVDQFEAGQELA-ADLFEEGAEVDVTGTTKGKGFAGTIKRWGFKSYRRTHGSHKNERRPGSVGA 151          

HSP 2 Score: 27.335 bits (59), Expect = 2.569e-29
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  731 TPXRVYQGKKMPXRMGGTTXRSEKL 805
            TP R+ +GK+M  RMG  T  ++ L
Sbjct:  154 TPSRILKGKRMAGRMGHVTATTQNL 178          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_LYSSC (50S ribosomal protein L3 OS=Lysinibacillus sphaericus (strain C3-41) GN=rplC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.570e-29
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIG 723
            G++G K+GM   F                 N+V Q KT  TDGY+A+Q+G+   R K   KP+ GH+ K+   P R ++EFR  +++ +E GQ++  E IF EGD++DV+G T GKGFQG IKRH    G M HGS+ HR+ GS+G
Sbjct:    4 GILGRKIGMTQVFAENGDLIPVTVIEATP-NVVLQKKTVETDGYEAIQVGFEDKRVKLSNKPQQGHVAKANTAPKRFIREFRNVNVEEYEVGQEVKVE-IFAEGDVIDVTGVTKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMG 147          

HSP 2 Score: 30.0314 bits (66), Expect = 2.570e-29
Identity = 16/49 (32.65%), Postives = 28/49 (57.14%), Query Frame = 2
Query:  707 NLGPLVLNTPXRVYQGKKMPXRMGGTTXRSEKLR-CKNCNDXSCVMIKG 850
            ++GP+    P RV++ KK+P +MGG     + L   K   D + +++KG
Sbjct:  145 SMGPVA---PNRVFKQKKLPGQMGGNVVTIQNLEIVKVDTDRNLLLVKG 190          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROM4 (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplC PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.711e-29
Identity = 84/200 (42.00%), Postives = 111/200 (55.50%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL**P-FLCNDKRAVPGKPENL 876
            IG++G KLGM  +F+                 I TQ+K+ ATDGY AVQIGY   R+K + KP  GHL KSG   +RHL E+R+  +  +E G K+     F  G  VDVSG ++G+GF G  KRH+F  G M+HGSK+HRQ GS GA  + G   PG+  A + G      R   + K+     L   K +VPGKP +L
Sbjct:    3 IGILGKKLGMSQFFDDKGRSVPVTLIEAGPCRI-TQLKSLATDGYSAVQIGYGFTREKLVNKPFKGHLSKSGEGFLRHLHEYRVDDLGVYELGAKITVGN-FEAGQKVDVSGNSMGRGFAGYQKRHSFSRGPMSHGSKNHRQPGSTGAGTTPGRIYPGKRMAGRYGGKKITTRGLTIMKIDSDRNLLVVKGSVPGKPGSL 200          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_RENSM (50S ribosomal protein L3 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.343e-29
Identity = 65/147 (44.22%), Postives = 90/147 (61.22%), Query Frame = 1
Query:  286 GVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGS-KSHRQFGSIG 723
            G++GTKLGM   ++              + N+VTQ++  A DGY AVQIGY ++  +K+TKP  GH +K+G+ P RH+ E R    D +  GQ+L+  EIF  G  VDV GT+ GKGF G +KRH F     +HG+ K+HR+ GSIG
Sbjct:    9 GILGTKLGMTQVWDENNKLVPVTVVQ-ADSNVVTQLRDAAKDGYTAVQIGYGQIDPRKVTKPLAGHFEKAGVTPRRHVVELRTNDSDAYSLGQELSV-EIFEAGQKVDVVGTSKGKGFAGVMKRHGFHGVGASHGAHKNHRKPGSIG 153          

HSP 2 Score: 28.4906 bits (62), Expect = 3.343e-29
Identity = 16/42 (38.10%), Postives = 24/42 (57.14%), Query Frame = 2
Query:  728 NTPXRVYQGKKMPXRMGGTTXRSEKLRCKNCN-DXSCVMIKG 850
            +TP RV++G KM  RMGG    +  L     + + S ++IKG
Sbjct:  156 STPSRVFKGLKMAGRMGGERHTTLNLTVHAIDAEKSLLLIKG 197          
BLAST of EY711310 vs. ExPASy Swiss-Prot
Match: RL3_PROMM (50S ribosomal protein L3 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.540e-29
Identity = 80/197 (40.61%), Postives = 109/197 (55.33%), Query Frame = 1
Query:  283 IGVMGTKLGMMSYFEXXXXXXXXXXXXFREGNIVTQVKTEATDGYDAVQIGYRRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSIDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRXGAMTHGSKSHRQFGSIGAEHS-GPCIPGEEDAXKNGRXNXKIRKAQM*KL-**PFLCNDKRAVPGKP 867
            IG++G KLGM  +F+                 I TQ+KT   DGY AVQIG+   R+K + KP  GHL KSG + ++HL+E+R++ ++G E G  +     F  G  VDVSG T+G+GF G  KRH F  G M+HGSK+HR+ GS GA  + G   PG+  A + G      R   + K+     L   K +VPGKP
Sbjct:    3 IGILGKKLGMSQFFDDQGRAIPVTLIEAGPCRI-TQLKTSEIDGYAAVQIGFGDTREKLINKPSKGHLTKSGEVLLKHLREYRVEGLEGLELGAAITVGS-FEAGQKVDVSGDTMGRGFAGYQKRHGFSRGPMSHGSKNHREPGSTGAGTTPGRIYPGKRMAGRYGGKKRTTRGLTILKVDSNRNLLVVKGSVPGKP 197          
The following BLAST results are available for this feature:
BLAST of EY711310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL3_SYNPW4.182e-3042.6450S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RK3_PAUCH5.462e-3041.0050S ribosomal protein L3, organellar chromatophore... [more]
RL3_BACP26.866e-3044.5250S ribosomal protein L3 OS=Bacillus pumilus (stra... [more]
RL3_BIFLO1.973e-2947.6250S ribosomal protein L3 OS=Bifidobacterium longum... [more]
RL3_BIFLD1.973e-2947.6250S ribosomal protein L3 OS=Bifidobacterium longum... [more]
RL3_BIFLI2.569e-2947.6250S ribosomal protein L3 OS=Bifidobacterium longum... [more]
RL3_LYSSC2.570e-2943.1550S ribosomal protein L3 OS=Lysinibacillus sphaeri... [more]
RL3_PROM42.711e-2942.0050S ribosomal protein L3 OS=Prochlorococcus marinu... [more]
RL3_RENSM3.343e-2944.2250S ribosomal protein L3 OS=Renibacterium salmonin... [more]
RL3_PROMM3.540e-2940.6150S ribosomal protein L3 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-006-C05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711310 ID=EY711310; Name=EY711310; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGTTTTGTAAACTCTGAAGCTCAGACTCTCATAATCTCATT
CATTCATTCTTCTCCTCATTCTTCTTCTTGAAAGTTGAAACAATCACTCA
ATCAAATGCCAATCTCTTCACTTTCACCAATTGGGCACTGTCCTCCATCT
CTATCTCTGAAATGCAACTTCCCATTTCGCCCCACAAGAAAGGCCTCAAT
TCTTGCCTCGCCCAAGCAGCCTCTCATTTTTACCACCAAAAGAACCACAA
CCCACATAGTTTCAATGAGCTACGAGGCGGGAATTGGCGTAATGGGCACC
AAGCTAGGCATGATGTCGTACTTCGAGCCCGACGGAACTGTTGTTCCGGT
GACTGTAGTTGGGTTCAGAGAAGGGAACATTGTGACCCAGGTTAAGACTG
AAGCCACTGACGGGTACGACGCCGTTCAGATTGGTTATAGGAGAGTAAGG
GACAAGAAGCTGACGAAACCTGAGCTGGGTCACTTGCAAAAGTCTGGGTT
AATACCCATGAGGCATTTGCAGGAGTTTAGGTTACAGTCTATTGATGGGT
TTGAGGCTGGCCAAAAGTTGGCTTTTGAAGAGATTTTTAATGAAGGGGAT
CTTGTCGATGTTTCTGGGACTACTATTGGCAAGGGTTTTCAAGGTGGCAT
TAAGCGGCACAATTTCAGAANGGGTGCGATGACCCATGGNTCTAAGAGTC
ATAGACAATTTGGGTCCATTGGTGCTGAACACTCCGGNCCGTGTATACCA
GGGGAAGAAGATGCCTGNAAGAATGGGAGGNACAACANGAAGATCAGAAA
AGCTCAGATGTAAAAATTGTAATGACCNTTCCTGTGTAATGATAAAAGGG
CTGTTCCTGGAAAGCCCGAAAATCTCTGCGTGTAGCACAGCTAG
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